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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
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- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
--->
-<head><title>Amino Acids</title>
+ -->
+<head>
+<title>Amino Acids</title>
<style type="text/css">
<!--
td {
<body>
-<div align="center">
- <table width="450" BORDER ="1" cellpadding="3" BGCOLOR="#FFFFFF">
- <tr>
- <td width="15">A</td>
- <td width="25">Ala</td>
- <td width="90">Alanine</td>
- <td width="80">aliphatic<br>
- hydrophobic<br>
- neutral </td>
- <td width="43" valign="middle">GCT<br>
- GCC<br>
- GCA<br>
- GCG</td>
- <td width="125"><img src="ala.jpg" width="94" height="81"></td>
- </tr>
- <tr>
- <td>B</td>
- <td> </td>
- <td>either aspartic acid or asparagine</td>
- <td> </td>
- <td> </td>
- <td> </td>
- </tr>
- <tr>
- <td>C</td>
- <td>Cys</td>
- <td>Cysteine</td>
- <td>polar<br>
- hydrophobic<br>
- neutral </td>
- <td>TGT<br>
- TGC</td>
- <td><img src="cys.jpg" width="82" height="95"></td>
- </tr>
- <tr>
- <td>D</td>
- <td>Asp</td>
- <td>Aspartic Acid</td>
- <td>polar<br>
- hydrophilic<br>
- charged (-) </td>
- <td>GAT<br>
- GAC</td>
- <td><img src="aspartate.jpg" width="95" height="103"></td>
- </tr>
- <tr>
- <td>E</td>
- <td>Glu</td>
- <td>Glutamic Acid</td>
- <td>polar<br>
- hydrophilic<br>
- charged (-) </td>
- <td>GAA<br>
- GAG</td>
- <td><img src="glutamate.jpg" width="93" height="128"></td>
- </tr>
- <tr>
- <td>F</td>
- <td>Phe</td>
- <td>Phenylalanine</td>
- <td>aromatic<br>
- hydrophobic<br>
- neutral</td>
- <td>TTT<br>
- TTC</td>
- <td><img src="phe.jpg" width="87" height="134"></td>
- </tr>
- <tr>
- <td>G</td>
- <td>Gly</td>
- <td>Glycine</td>
- <td> </td>
- <td>GGT<br>
- GGC<br>
- GGA<br>
- GGG</td>
- <td><img src="gly.jpg" width="97" height="79"></td>
- </tr>
- <tr>
- <td>H</td>
- <td>His</td>
- <td>Histidine</td>
- <td>aromatic<br>
- polar<br>
- hydrophilic<br>
- charged (+) </td>
- <td>CAT<br>
- CAC</td>
- <td><img src="his.jpg" width="97" height="142"></td>
- </tr>
- <tr>
- <td>I</td>
- <td>Ile</td>
- <td>Isoleucine</td>
- <td>aliphatic<br>
- hydrophobic<br>
- neutral </td>
- <td>ATT<br>
- ATC<br>
- ATA</td>
- <td><img src="iso.jpg" width="101" height="125"></td>
- </tr>
- <tr>
- <td>K</td>
- <td>Lys</td>
- <td>Lysine</td>
- <td> </td>
- <td>AAA<br>
- AAG</td>
- <td><img src="lys.jpg" width="79" height="167"></td>
- </tr>
- <tr>
- <td>L</td>
- <td>Leu</td>
- <td>Leucine</td>
- <td>aliphatic<br>
- hydrophobic<br>
- neutral </td>
- <td>TTG<br>
- TTA<br>
- CTT<br>
- CTC<br>
- CTA<br>
- CTG</td>
- <td><img src="leu.jpg" width="97" height="120"></td>
- </tr>
- <tr>
- <td>M</td>
- <td>Met</td>
- <td>Methionine</td>
- <td>hydrophobic<br>
- neutral </td>
- <td>ATG</td>
- <td><img src="met.jpg" width="86" height="151"></td>
- </tr>
- <tr>
- <td>N</td>
- <td>Asn</td>
- <td>Asparagine</td>
- <td>polar<br>
- hydrophilic<br>
- neutral </td>
- <td>AAT<br>
- AAC</td>
- <td><img src="asparagine.jpg" width="84" height="116"></td>
- </tr>
- <tr>
- <td>P</td>
- <td>Pro</td>
- <td>Proline</td>
- <td>hydrophobic<br>
- neutral</td>
- <td>CCT<br>
- CCC<br>
- CCA<br>
- CCG</td>
- <td><img src="pro.jpg" width="101" height="90"></td>
- </tr>
- <tr>
- <td>Q</td>
- <td>Gln</td>
- <td>Glutamine</td>
- <td>polar<br>
- hydrophilic<br>
- neutral</td>
- <td>CAA<br>
- CAG</td>
- <td><img src="glutamine.jpg" width="81" height="137"></td>
- </tr>
- <tr>
- <td>R</td>
- <td>Arg</td>
- <td>Arginine</td>
- <td>polar<br>
- hydrophilic<br>
- charged (+) </td>
- <td>CGT<br>
- CGC<br>
- CGA<br>
- CGG<br>
- AGA<br>
- AGG</td>
- <td><img src="arg.jpg" width="95" height="187"></td>
- </tr>
- <tr>
- <td>S</td>
- <td>Ser</td>
- <td>Serine</td>
- <td>polar<br>
- hydrophilic<br>
- neutral </td>
- <td>TCT<br>
- TCC<br>
- TCA<br>
- TCG<br>
- AGT<br>
- AGC</td>
- <td><img src="ser.jpg" width="96" height="74"></td>
- </tr>
- <tr>
- <td>T</td>
- <td>Thr</td>
- <td>Threonine</td>
- <td>polar<br>
- hydrophilic<br>
- neutral </td>
- <td>ACT<br>
- ACC<br>
- ACA<br>
- ACG</td>
- <td><img src="thr.jpg" width="94" height="96"></td>
- </tr>
- <tr>
- <td>V</td>
- <td>Val</td>
- <td>Valine</td>
- <td>aliphatic<br>
- hydrophobic<br>
- neutral </td>
- <td>GTT<br>
- GTC<br>
- GTA<br>
- GTG</td>
- <td><img src="val.jpg" width="99" height="98"></td>
- </tr>
- <tr>
- <td>W</td>
- <td>Trp</td>
- <td>Tryptophan</td>
- <td>aromatic<br>
- hydrophobic<br>
- neutral</td>
- <td>TGG</td>
- <td><img src="tryp.jpg" width="106" height="173"></td>
- </tr>
- <tr>
- <td>X</td>
- <td> </td>
- <td>UNKNOWN</td>
- <td> </td>
- <td> </td>
- <td> </td>
- </tr>
- <tr>
- <td>Y</td>
- <td>Tyr</td>
- <td>Tyrosine</td>
- <td>aromatic<br>
- polar<br>
- hydrophobic </td>
- <td>TAT<br>
- TAC</td>
- <td><img src="tyr.jpg" width="85" height="152"></td>
- </tr>
- <tr>
- <td>Z</td>
- <td> </td>
- <td>either glutamic acid or glutamine</td>
- <td> </td>
- <td> </td>
- <td> </td>
- </tr>
- <tr>
- <td> </td>
- <td>End</td>
- <td>Terminator</td>
- <td> </td>
- <td>TAA<br>
- TAG<br>
- TGA</td>
- <td> </td>
- </tr>
- </table>
+ <div align="center">
+ <table width="450" BORDER="1" cellpadding="3" BGCOLOR="#FFFFFF">
+ <tr>
+ <td width="15">A</td>
+ <td width="25">Ala</td>
+ <td width="90">Alanine</td>
+ <td width="80">aliphatic<br> hydrophobic<br>
+ neutral
+ </td>
+ <td width="43" valign="middle">GCT<br> GCC<br>
+ GCA<br> GCG
+ </td>
+ <td width="125"><img src="ala.jpg" width="94" height="81"></td>
+ </tr>
+ <tr>
+ <td>B</td>
+ <td> </td>
+ <td>either aspartic acid or asparagine</td>
+ <td> </td>
+ <td> </td>
+ <td> </td>
+ </tr>
+ <tr>
+ <td>C</td>
+ <td>Cys</td>
+ <td>Cysteine</td>
+ <td>polar<br> hydrophobic<br> neutral
+ </td>
+ <td>TGT<br> TGC
+ </td>
+ <td><img src="cys.jpg" width="82" height="95"></td>
+ </tr>
+ <tr>
+ <td>D</td>
+ <td>Asp</td>
+ <td>Aspartic Acid</td>
+ <td>polar<br> hydrophilic<br> charged (-)
+ </td>
+ <td>GAT<br> GAC
+ </td>
+ <td><img src="aspartate.jpg" width="95" height="103"></td>
+ </tr>
+ <tr>
+ <td>E</td>
+ <td>Glu</td>
+ <td>Glutamic Acid</td>
+ <td>polar<br> hydrophilic<br> charged (-)
+ </td>
+ <td>GAA<br> GAG
+ </td>
+ <td><img src="glutamate.jpg" width="93" height="128"></td>
+ </tr>
+ <tr>
+ <td>F</td>
+ <td>Phe</td>
+ <td>Phenylalanine</td>
+ <td>aromatic<br> hydrophobic<br> neutral
+ </td>
+ <td>TTT<br> TTC
+ </td>
+ <td><img src="phe.jpg" width="87" height="134"></td>
+ </tr>
+ <tr>
+ <td>G</td>
+ <td>Gly</td>
+ <td>Glycine</td>
+ <td> </td>
+ <td>GGT<br> GGC<br> GGA<br> GGG
+ </td>
+ <td><img src="gly.jpg" width="97" height="79"></td>
+ </tr>
+ <tr>
+ <td>H</td>
+ <td>His</td>
+ <td>Histidine</td>
+ <td>aromatic<br> polar<br> hydrophilic<br>
+ charged (+)
+ </td>
+ <td>CAT<br> CAC
+ </td>
+ <td><img src="his.jpg" width="97" height="142"></td>
+ </tr>
+ <tr>
+ <td>I</td>
+ <td>Ile</td>
+ <td>Isoleucine</td>
+ <td>aliphatic<br> hydrophobic<br> neutral
+ </td>
+ <td>ATT<br> ATC<br> ATA
+ </td>
+ <td><img src="iso.jpg" width="101" height="125"></td>
+ </tr>
+ <tr>
+ <td>K</td>
+ <td>Lys</td>
+ <td>Lysine</td>
+ <td> </td>
+ <td>AAA<br> AAG
+ </td>
+ <td><img src="lys.jpg" width="79" height="167"></td>
+ </tr>
+ <tr>
+ <td>L</td>
+ <td>Leu</td>
+ <td>Leucine</td>
+ <td>aliphatic<br> hydrophobic<br> neutral
+ </td>
+ <td>TTG<br> TTA<br> CTT<br> CTC<br> CTA<br>
+ CTG
+ </td>
+ <td><img src="leu.jpg" width="97" height="120"></td>
+ </tr>
+ <tr>
+ <td>M</td>
+ <td>Met</td>
+ <td>Methionine</td>
+ <td>hydrophobic<br> neutral
+ </td>
+ <td>ATG</td>
+ <td><img src="met.jpg" width="86" height="151"></td>
+ </tr>
+ <tr>
+ <td>N</td>
+ <td>Asn</td>
+ <td>Asparagine</td>
+ <td>polar<br> hydrophilic<br> neutral
+ </td>
+ <td>AAT<br> AAC
+ </td>
+ <td><img src="asparagine.jpg" width="84" height="116"></td>
+ </tr>
+ <tr>
+ <td>P</td>
+ <td>Pro</td>
+ <td>Proline</td>
+ <td>hydrophobic<br> neutral
+ </td>
+ <td>CCT<br> CCC<br> CCA<br> CCG
+ </td>
+ <td><img src="pro.jpg" width="101" height="90"></td>
+ </tr>
+ <tr>
+ <td>Q</td>
+ <td>Gln</td>
+ <td>Glutamine</td>
+ <td>polar<br> hydrophilic<br> neutral
+ </td>
+ <td>CAA<br> CAG
+ </td>
+ <td><img src="glutamine.jpg" width="81" height="137"></td>
+ </tr>
+ <tr>
+ <td>R</td>
+ <td>Arg</td>
+ <td>Arginine</td>
+ <td>polar<br> hydrophilic<br> charged (+)
+ </td>
+ <td>CGT<br> CGC<br> CGA<br> CGG<br> AGA<br>
+ AGG
+ </td>
+ <td><img src="arg.jpg" width="95" height="187"></td>
+ </tr>
+ <tr>
+ <td>S</td>
+ <td>Ser</td>
+ <td>Serine</td>
+ <td>polar<br> hydrophilic<br> neutral
+ </td>
+ <td>TCT<br> TCC<br> TCA<br> TCG<br> AGT<br>
+ AGC
+ </td>
+ <td><img src="ser.jpg" width="96" height="74"></td>
+ </tr>
+ <tr>
+ <td>T</td>
+ <td>Thr</td>
+ <td>Threonine</td>
+ <td>polar<br> hydrophilic<br> neutral
+ </td>
+ <td>ACT<br> ACC<br> ACA<br> ACG
+ </td>
+ <td><img src="thr.jpg" width="94" height="96"></td>
+ </tr>
+ <tr>
+ <td>V</td>
+ <td>Val</td>
+ <td>Valine</td>
+ <td>aliphatic<br> hydrophobic<br> neutral
+ </td>
+ <td>GTT<br> GTC<br> GTA<br> GTG
+ </td>
+ <td><img src="val.jpg" width="99" height="98"></td>
+ </tr>
+ <tr>
+ <td>W</td>
+ <td>Trp</td>
+ <td>Tryptophan</td>
+ <td>aromatic<br> hydrophobic<br> neutral
+ </td>
+ <td>TGG</td>
+ <td><img src="tryp.jpg" width="106" height="173"></td>
+ </tr>
+ <tr>
+ <td>X</td>
+ <td> </td>
+ <td>UNKNOWN</td>
+ <td> </td>
+ <td> </td>
+ <td> </td>
+ </tr>
+ <tr>
+ <td>Y</td>
+ <td>Tyr</td>
+ <td>Tyrosine</td>
+ <td>aromatic<br> polar<br> hydrophobic
+ </td>
+ <td>TAT<br> TAC
+ </td>
+ <td><img src="tyr.jpg" width="85" height="152"></td>
+ </tr>
+ <tr>
+ <td>Z</td>
+ <td> </td>
+ <td>either glutamic acid or glutamine</td>
+ <td> </td>
+ <td> </td>
+ <td> </td>
+ </tr>
+ <tr>
+ <td> </td>
+ <td>End</td>
+ <td>Terminator</td>
+ <td> </td>
+ <td>TAA<br> TAG<br> TGA
+ </td>
+ <td> </td>
+ </tr>
+ </table>
</div>
</body>
</html>