</div>
</td>
</tr>
+
+ <td width="60" nowrap>
+ <div align="center">
+ <strong><a name="Jalview.2.11.0">2.11.0</a><br />
+ <em>29/01/2019</em></strong>
+ </div>
+ </td>
+ <td><div align="left">
+ <em>Deprecations</em>
+ <ul>
+ <li>
+ <!-- JAL-3035 -->DAS sequence retrieval and annotation
+ capabilities removed from the Jalview Desktop
+ </li>
+ </ul>
+ <em>Release Processes</em>
+ <ul>
+ <li>Atlassian Bamboo continuous integration server for unattended Test Suite execution</li>
+ <li><!-- JAL-2864 -->Memory test suite to detect leaks in common operations</li>
+ </ul>
+ </div></td>
+ <td><div align="left">
+ <em></em>
+ <ul>
+ <li>
+ <!-- JAL-2865 -->Jalview hangs when closing windows
+ or the overview updates with large alignments.
+ </li>
+ <li>
+ <!-- JAL-2865 -->Tree and PCA calculation fails for selected
+ region if columns were selected by dragging right-to-left
+ and the mouse moved to the left of the first column.
+ </li>
+ <li>
+ <!-- JAL-2846 -->Error message for trying to load in invalid
+ URLs doesn't tell users the invalid URL
+ </li>
+ </ul>
+ <em>Editing</em>
+ <ul>
+ <li>
+ <!-- JAL-2822 -->Start and End should be updated when
+ sequence data at beginning or end of alignment added/removed
+ via 'Edit' sequence
+ </li>
+ <li>
+ <!-- JAL-2541 -->Delete/Cut selection doesn't relocate
+ sequence features correctly when start of sequence is
+ removed (Known defect since 2.10)
+ </li>
+ <li>
+ <!-- JAL- -->
+ </li>
+ </ul>
+ <em>New Known Defects</em>
+ <ul>
+ <li>
+ <!-- JAL-3178 -->Nonpositional features lose feature group
+ on export as jalview features file
+ </li>
+ </ul>
+ </div></td>
+ </tr>
<tr>
<td width="60" nowrap>
<div align="center">
- <strong><a name="Jalview.2.10.5">2.10.5</a><br /> <em>6/09/2018</em></strong>
+ <strong><a name="Jalview.2.10.5">2.10.5</a><br /> <em>10/09/2018</em></strong>
</div>
</td>
<td><div align="left">
annotation displayed.
</li>
<li>
+ <!-- JAL-3107 -->Group conservation/consensus not shown
+ for newly created group when 'Apply to all groups'
+ selected
+ </li>
+ <li>
<!-- JAL-3087 -->Corrupted display when switching to
wrapped mode when sequence panel's vertical scrollbar is
visible.
and lower-case 'E' and 'H' do not automatically get
treated as RNA secondary structure.
</li>
+ <li>
+ <!-- JAL-3106 -->.jvp should be used as default extension
+ (not .jar) when saving a jalview project file.
+ </li>
+ <li>
+ <!-- JAL-3105 -->Mac Users: closing a window correctly
+ transfers focus to previous window on OSX
+ </li>
</ul>
- <em>Java 10 Issues</em>
+ <em>Java 10 Issues Resolved</em>
<ul>
<li>
<!-- JAL-2988 -->OSX - Can't save new files via the File
or export menus by typing in a name into the Save dialog
box.
</li>
+ <li>
+ <!-- JAL-2988 JAL-2968 -->Jalview now uses patched version
+ of the <a href="https://violetlib.org/vaqua/overview.html">VAqua5</a>
+ 'look and feel' which has improved compatibility with the
+ latest version of OSX.
+ </li>
</ul>
- </div>
+ </div>
</td>
</tr>
<tr>