DisEMBL and GlobProt web services further work

[jabaws.git] / runner / compbio / runner / disorder / Disembl.java

diff --git a/runner/compbio/runner/disorder/Disembl.java b/runner/compbio/runner/disorder/Disembl.java
index 83ca5d3..616b552 100644 (file)
--- a/runner/compbio/runner/disorder/Disembl.java
+++ b/runner/compbio/runner/disorder/Disembl.java
@@ -19,8 +19,8 @@ import java.io.FileInputStream;
 import java.io.FileNotFoundException;\r
 import java.io.IOException;\r
 import java.io.InputStream;\r
-import java.util.Map;\r
-import java.util.Set;\r
+import java.util.HashMap;\r
+import java.util.HashSet;\r
 \r
 import org.apache.log4j.Logger;\r
 \r
@@ -84,12 +84,13 @@ public class Disembl extends SkeletalExecutable<Disembl>
        }\r
 \r
        @SuppressWarnings("unchecked")\r
-       public Map<String, Set<Score>> getResults(String workDirectory)\r
+       @Override\r
+       public HashMap<String, HashSet<Score>> getResults(String workDirectory)\r
                        throws ResultNotAvailableException {\r
 \r
                InputStream inStream = null;\r
-               Map<String, Set<Score>> results = null;\r
-               // How about getting ranges?\r
+               HashMap<String, HashSet<Score>> results = null;\r
+\r
                try {\r
                        inStream = new FileInputStream(new File(workDirectory, getOutput()));\r
                        results = SequenceUtil.removeSequences(SequenceUtil\r
@@ -108,7 +109,7 @@ public class Disembl extends SkeletalExecutable<Disembl>
                        log.error(e.getMessage(), e.getCause());\r
                        throw new ResultNotAvailableException(e);\r
                }\r
-\r
+               log.trace("DRESULTS: " + results);\r
                return results;\r
        }\r
 \r