JWS-86 made few changes to text, plus couple of links were faulty so changed ClustalW...

[jabaws.git] / runner / compbio / runner / disorder / Disembl.java

diff --git a/runner/compbio/runner/disorder/Disembl.java b/runner/compbio/runner/disorder/Disembl.java
index 7c54af1..b6453a7 100644 (file)
--- a/runner/compbio/runner/disorder/Disembl.java
+++ b/runner/compbio/runner/disorder/Disembl.java
@@ -28,7 +28,7 @@ import compbio.data.sequence.UnknownFileFormatException;
 import compbio.engine.client.PipedExecutable;\r
 import compbio.engine.client.SkeletalExecutable;\r
 import compbio.metadata.ResultNotAvailableException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
 \r
 /**\r
  * DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops\r
@@ -53,14 +53,10 @@ import compbio.runner.Util;
  * This is not a standard DisEMBL! The script has been modified!\r
  * \r
  */\r
-public class Disembl extends SkeletalExecutable<Disembl>\r
-               implements\r
-                       PipedExecutable<Disembl> {\r
+public class Disembl extends SkeletalExecutable<Disembl> implements PipedExecutable<Disembl> {\r
 \r
        private static Logger log = Logger.getLogger(Disembl.class);\r
 \r
-       public static final String KEY_VALUE_SEPARATOR = Util.SPACE;\r
-\r
        /**\r
         * For the region to be considered disordered the values must exceed these\r
         */\r
@@ -104,6 +100,7 @@ public class Disembl extends SkeletalExecutable<Disembl>
                log.trace("DRESULTS: " + results);\r
                return results;\r
        }\r
+\r
        @Override\r
        public Disembl setInput(String inFile) {\r
                super.setInput(inFile);\r