import compbio.data.sequence.ScoreManager;\r
import compbio.data.sequence.SequenceUtil;\r
import compbio.data.sequence.UnknownFileFormatException;\r
-import compbio.engine.client.Executable;\r
import compbio.engine.client.PipedExecutable;\r
import compbio.engine.client.SkeletalExecutable;\r
import compbio.metadata.ResultNotAvailableException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
\r
/**\r
* DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops\r
* This is not a standard DisEMBL! The script has been modified!\r
* \r
*/\r
-public class Disembl extends SkeletalExecutable<Disembl>\r
- implements\r
- PipedExecutable<Disembl> {\r
+public class Disembl extends SkeletalExecutable<Disembl> implements PipedExecutable<Disembl> {\r
\r
private static Logger log = Logger.getLogger(Disembl.class);\r
\r
- public static final String KEY_VALUE_SEPARATOR = Util.SPACE;\r
-\r
/**\r
* For the region to be considered disordered the values must exceed these\r
*/\r
log.trace("DRESULTS: " + results);\r
return results;\r
}\r
+\r
@Override\r
public Disembl setInput(String inFile) {\r
super.setInput(inFile);\r
\r
@SuppressWarnings("unchecked")\r
@Override\r
- public Class<Executable<Disembl>> getType() {\r
- return (Class<Executable<Disembl>>) this.getClass();\r
+ public Class<Disembl> getType() {\r
+ return (Class<Disembl>) this.getClass();\r
}\r
\r
}\r