import compbio.data.sequence.ScoreManager;\r
import compbio.data.sequence.SequenceUtil;\r
import compbio.data.sequence.UnknownFileFormatException;\r
-import compbio.engine.client.Executable;\r
import compbio.engine.client.PipedExecutable;\r
import compbio.engine.client.SkeletalExecutable;\r
import compbio.metadata.ResultNotAvailableException;\r
-import compbio.runner.Util;\r
+import compbio.runner.RunnerUtil;\r
\r
/**\r
* ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame\r
* This is not a standard GlobPlot! The script has been modified!\r
* \r
*/\r
-public class GlobPlot extends SkeletalExecutable<GlobPlot>\r
- implements\r
- PipedExecutable<GlobPlot> {\r
+public class GlobPlot extends SkeletalExecutable<GlobPlot> implements PipedExecutable<GlobPlot> {\r
\r
private static Logger log = Logger.getLogger(GlobPlot.class);\r
\r
- public static final String KEY_VALUE_SEPARATOR = Util.SPACE;\r
-\r
/* The parameter list there must not contain same values! */\r
public GlobPlot() {\r
// remove default input to prevent it to appear in the parameters list\r
// super.setInput("");\r
}\r
\r
+ @Override\r
@SuppressWarnings("unchecked")\r
public ScoreManager getResults(String workDirectory)\r
throws ResultNotAvailableException {\r
\r
@SuppressWarnings("unchecked")\r
@Override\r
- public Class<Executable<GlobPlot>> getType() {\r
- return (Class<Executable<GlobPlot>>) this.getClass();\r
+ public Class<GlobPlot> getType() {\r
+ return (Class<GlobPlot>) this.getClass();\r
}\r
\r
}\r