-/* Copyright (c) 2009 Peter Troshin\r
+/* Copyright (c) 2011 Peter Troshin\r
* \r
- * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0\r
+ * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0 \r
* \r
* This library is free software; you can redistribute it and/or modify it under the terms of the\r
* Apache License version 2 as published by the Apache Software Foundation\r
\r
import compbio.data.sequence.Alignment;\r
import compbio.data.sequence.UnknownFileFormatException;\r
-import compbio.engine.client.ClusterNativeSpecExecutable;\r
import compbio.engine.client.CommandBuilder;\r
import compbio.engine.client.Executable;\r
import compbio.engine.client.PipedExecutable;\r
\r
public class Tcoffee extends SkeletalExecutable<Tcoffee>\r
implements\r
- PipedExecutable<Tcoffee>,\r
- ClusterNativeSpecExecutable<Tcoffee> {\r
+ PipedExecutable<Tcoffee> {\r
\r
private static Logger log = Logger.getLogger(Tcoffee.class);\r
\r
private final static String ncorePrm = "-n_core";\r
\r
/**\r
- * \r
- * @param workDirectory\r
*/\r
public Tcoffee() {\r
super(KEY_VALUE_SEPARATOR);\r
return super.getParameters(provider);\r
}\r
\r
- @Override\r
- public String getNativeSpecs() {\r
- return getClusterSettings();\r
- }\r
-\r
@SuppressWarnings("unchecked")\r
@Override\r
- public Class<Executable<Tcoffee>> getType() {\r
- return (Class<Executable<Tcoffee>>) this.getClass();\r
+ public Class<Tcoffee> getType() {\r
+ return (Class<Tcoffee>) this.getClass();\r
}\r
}\r