</xs:simpleContent>
</xs:complexType>
</xs:element>
+ <xs:element name="treenode" minOccurs="0" maxOccurs="unbounded">
+ <xs:annotation>
+ <xs:documentation>
+ node identity and mapping data between tree representations and vamsas document objects
+ </xs:documentation>
+ </xs:annotation>
+ <xs:complexType>
+ <xs:complexContent>
+ <xs:extension base="vamsas:nodeType">
+ <xs:attribute name="treeId" type="xs:IDREFS">
+ <xs:annotation>
+ <xs:documentation>
+ reference to one or more trees containing the node being described.
+ </xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="nodespec" type="xs:string">
+ <xs:annotation>
+ <xs:documentation>
+ String uniquely identifying a particular node in the referenced tree according to the format of the tree representation that is referenced.
+ </xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+
+ </xs:extension>
+ </xs:complexContent>
+ </xs:complexType>
+ </xs:element>
<xs:element ref="vamsas:property" minOccurs="0" maxOccurs="unbounded"/>
<xs:element ref="vamsas:Provenance"/>
</xs:sequence>
<xs:attribute name="modifiable" type="vamsas:locks" use="optional"/>
</xs:complexType>
</xs:element>
+ <xs:complexType name="referenceType">
+ <xs:annotation>
+ <xs:documentation>
+ base type for citing arbitrary links between vamsas objects
+ </xs:documentation>
+ </xs:annotation>
+ <xs:simpleContent>
+ <xs:extension base="xs:string">
+ <xs:annotation>
+ <xs:documentation>
+ Optional human readable description of the relationship
+ </xs:documentation>
+ </xs:annotation>
+ <xs:attribute name="id" type="xs:ID" use="optional">
+ <xs:annotation>
+ <xs:documentation> Primary Key for vamsas object referencing </xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="refs" type="xs:IDREFS">
+ <xs:annotation>
+ <xs:documentation>List of one or more vamsas object references</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ </xs:extension>
+ </xs:simpleContent>
+ </xs:complexType>
+ <xs:complexType name="nodeType">
+ <xs:sequence>
+ <xs:element name="name" type="xs:string" minOccurs="0" maxOccurs="1">
+ <xs:annotation>
+ <xs:documentation>Short name for this node</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element name="description" type="xs:string" minOccurs="0" maxOccurs="1">
+ <xs:annotation>
+ <xs:documentation>Descriptive text for this node</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element name="vref" type="vamsas:referenceType" minOccurs="0" maxOccurs="unbounded">
+ <xs:annotation>
+ <xs:documentation>Direct associations between this node and any vamsas objects</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element ref="vamsas:property" minOccurs="0" maxOccurs="unbounded"/>
+ </xs:sequence>
+ <xs:attribute name="id" type="xs:ID" use="optional">
+ <xs:annotation>
+ <xs:documentation> Primary Key for vamsas object referencing </xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="modifiable" type="vamsas:locks" use="optional"/>
+ </xs:complexType>
<xs:element name="property">
<xs:complexType>
<xs:simpleContent>
<xs:complexContent>
<xs:extension base="vamsas:rangeType">
<xs:attribute name="name" type="xs:string" use="required"/>
- <xs:attribute name="objRef" type="xs:IDREF" use="optional">
+ <xs:attribute name="objRef" type="xs:IDREFS" use="optional">
<xs:annotation>
<xs:documentation> Reference Frame for rangeType specfication
</xs:documentation>
<xs:documentation> Did what </xs:documentation>
</xs:annotation>
</xs:element>
- <xs:element name="Date" type="xs:date">
+ <xs:element name="Date" type="xs:dateTime">
<xs:annotation>
- <xs:documentation> When </xs:documentation>
+ <xs:documentation> When</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element ref="vamsas:property" minOccurs="0" maxOccurs="unbounded">
</xs:attribute>
</xs:complexType>
</xs:element>
+ <xs:element name="vxref" type="vamsas:referenceType" minOccurs="0" maxOccurs="unbounded">
+ <xs:annotation>
+ <xs:documentation>
+ explicitly named cross reference to other objects in the document.
+ </xs:documentation>
+ </xs:annotation>
+ </xs:element>
</xs:sequence>
<xs:attribute name="id" type="xs:ID" use="optional">
<xs:annotation>
<xs:sequence>
<xs:element ref="vamsas:Provenance"/>
</xs:sequence>
- <xs:attribute name="seqRef" type="xs:IDREF" use="required">
+ <xs:attribute name="seqRef" type="xs:IDREFS" use="required">
<xs:annotation>
<xs:documentation> annotation is associated with a
particular dataset sequence </xs:documentation>
graph </xs:documentation>
</xs:annotation>
</xs:attribute>
+ <xs:attribute name="seqrefs" type="xs:IDREFS" use="optional">
+ <xs:annotation>
+ <xs:documentation> annotation is associated with a
+ range on a particular group of alignment sequences</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+
</xs:extension>
</xs:complexContent>
</xs:complexType>