import java.util.ArrayList;
import java.util.Calendar;
import java.util.Date;
+import java.util.HashMap;
import java.util.List;
import java.util.Map;
import compbio.cassandra.DateBean;
import compbio.cassandra.ProteinBean;
import compbio.cassandra.CassandraNativeConnector;
-import compbio.cassandra.CassandraReader;
+import compbio.cassandra.CassandraReaderOld;
import compbio.cassandra.DataBase;
import compbio.cassandra.Pair;
import compbio.cassandra.JobBean;
import compbio.engine.JobStatus;
public class CassandraRequester {
- private CassandraReader db = new CassandraReader();
+ private CassandraReaderOld db = new CassandraReaderOld();
private ArrayList<DataBase> query;
private static long currentDate = 0;
private static long earlestDate = 0;
* query: total number of jobs for the period from date1 till date2
*/
public TotalJobsStatisticBean countJobs(String date1, String date2) {
- if (null == date1) {
- date1 = "1970/1/1";
- }
- if (null == date2) {
- date1 = "2100/1/1";
- }
- if (!isThisDateValid(date1, formatYYMMDD) || !isThisDateValid(date2, formatYYMMDD)) {
- System.out.println("CassandraRequester.countJobs: wrong format for date1 " + date1 + "or date2 " + date2);
- return null;
- }
+ /*
+ * if (null == date1) { date1 = "1970/1/1"; } if (null == date2) { date1
+ * = "2100/1/1"; } if (!isThisDateValid(date1, formatYYMMDD) ||
+ * !isThisDateValid(date2, formatYYMMDD)) { System.out.println(
+ * "CassandraRequester.countJobs: wrong format for date1 " + date1 +
+ * "or date2 " + date2); return null; }
+ */
SetDateRange();
long dateStart = DateParsing(date1, formatYYMMDD);
long dateEnd = DateParsing(date2, formatYYMMDD);
- if (dateEnd < earlestDate || dateStart > currentDate || dateStart > dateEnd)
- return null;
- if (dateStart < earlestDate)
- dateStart = earlestDate;
- if (dateEnd > currentDate)
- dateStart = currentDate;
-
+ /*
+ * if (dateEnd < earlestDate || dateStart > currentDate || dateStart >
+ * dateEnd) return null; if (dateStart < earlestDate) dateStart =
+ * earlestDate; if (dateEnd > currentDate) dateStart = currentDate;
+ */
Calendar start = Calendar.getInstance();
start.setTime(new Date(dateStart));
Calendar end = Calendar.getInstance();
long day = DateParsing(date, formatDDMMYY);
if (day < earlestDate || day > currentDate)
return null;
-
+
if (status == JobStatus.OK) {
return db.ReadProteinData(day, date);
}
}
/*
+ * query: protein feature
+ */
+ public Map<String, String> readProteinsPrediction(String feature, int percent) {
+ Map<String, String> result = db.ReadProtein();
+ ;
+ if (result == null)
+ return null;
+ Map<String, String> query = new HashMap<String, String>();
+ for (Map.Entry<String, String> entry : result.entrySet()) {
+ String pred = entry.getValue();
+ if (pred.replaceAll("[^" + feature + "]", "").length() > pred.length() * percent / 100 && (!entry.getKey().equals(""))) {
+ // if (!entry.getKey().equals(""))
+ query.put(entry.getKey(), pred);
+ }
+ }
+ return query;
+ }
+
+ /*
* query protein sequences with number of jobs
*/
public List<TotalByCounterBean> readProteinByCounter(int minimalcounter) {
return earlestDate;
}
+ /**
+ * prepares an example of either job id or IP for the DB
+ *
+ * @param exampletype
+ * defines which example you need (an existing job from the DB -
+ * jobid, an IP - "ip")
+ * @return a string representation of the requested example, if the example
+ * type is not known empty string is returned
+ */
+ public String getExample(String exampletype) {
+ if (exampletype.equals("jobid")) {
+ return "jp_NzBOJKo";
+ } else if (exampletype.equals("ip")) {
+ return "127.0.0.1";
+ }
+ return "";
+ }
+
}