/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package MCview;
-import java.awt.*;
+import java.awt.Color;
public class Bond
{
public Atom at2;
- public Bond(float[] start, float[] end, Atom at1, Atom at2)
+ public Bond(Atom at1, Atom at2)
{
- this.start = start;
- this.end = end;
+ this.start = new float[] { at1.x, at1.y, at1.z };
+ this.end = new float[] { at2.x, at2.y, at2.z };
this.startCol = at1.color;
this.endCol = at2.color;
this.at1 = at1;
public void translate(float x, float y, float z)
{
- start[0] = (start[0] + x);
- end[0] = (end[0] + x);
+ start[0] = start[0] + x;
+ end[0] = end[0] + x;
- start[1] = (start[1] + y);
- end[1] = (end[1] + y);
+ start[1] = start[1] + y;
+ end[1] = end[1] + y;
- start[2] = (start[2] + z);
- end[2] = (end[2] + z);
+ start[2] = start[2] + z;
+ end[2] = end[2] + z;
}
}