/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package MCview;
-import java.awt.*;
+import java.awt.Color;
public class Bond
{
public Atom at2;
- public Bond(float[] start, float[] end, Atom at1, Atom at2)
+ public Bond(Atom at1, Atom at2)
{
- this.start = start;
- this.end = end;
+ this.start = new float[] { at1.x, at1.y, at1.z };
+ this.end = new float[] { at2.x, at2.y, at2.z };
this.startCol = at1.color;
this.endCol = at2.color;
this.at1 = at1;
/*
* public Bond(Bond bond) { this.start = new float[3];
*
- * this.start[0] = bond.start[0]; this.start[1] = bond.start[1]; this.start[2] =
- * bond.start[2];
+ * this.start[0] = bond.start[0]; this.start[1] = bond.start[1]; this.start[2]
+ * = bond.start[2];
*
* this.end = new float[3];
*
public void translate(float x, float y, float z)
{
- start[0] = (start[0] + x);
- end[0] = (end[0] + x);
+ start[0] = start[0] + x;
+ end[0] = end[0] + x;
- start[1] = (start[1] + y);
- end[1] = (end[1] + y);
+ start[1] = start[1] + y;
+ end[1] = end[1] + y;
- start[2] = (start[2] + z);
- end[2] = (end[2] + z);
+ start[2] = start[2] + z;
+ end[2] = end[2] + z;
}
}