import javax.swing.JPanel;
import javax.swing.ToolTipManager;
-public class PDBCanvas extends JPanel implements MouseListener,
- MouseMotionListener, StructureListener
+public class PDBCanvas extends JPanel
+ implements MouseListener, MouseMotionListener, StructureListener
{
boolean redrawneeded = true;
for (int i = 0; i < pdb.getChains().size(); i++)
{
- mappingDetails
- .append("\n\nPDB Sequence is :\nSequence = "
- + pdb.getChains().elementAt(i).sequence
- .getSequenceAsString());
+ mappingDetails.append("\n\nPDB Sequence is :\nSequence = "
+ + pdb.getChains().elementAt(i).sequence
+ .getSequenceAsString());
mappingDetails.append("\nNo of residues = "
+ pdb.getChains().elementAt(i).residues.size() + "\n\n");
if (pos > 0)
{
pos = sequence[s].findIndex(pos);
- tmp.endCol = sr
- .getResidueColour(sequence[s], pos, finder);
+ tmp.endCol = sr.getResidueColour(sequence[s], pos,
+ finder);
}
}
{
tmpBond = visiblebonds.elementAt(i);
- xstart = (int) (((tmpBond.start[0] - centre[0]) * scale) + (getWidth() / 2));
- ystart = (int) (((centre[1] - tmpBond.start[1]) * scale) + (getHeight() / 2));
+ xstart = (int) (((tmpBond.start[0] - centre[0]) * scale)
+ + (getWidth() / 2));
+ ystart = (int) (((centre[1] - tmpBond.start[1]) * scale)
+ + (getHeight() / 2));
- xend = (int) (((tmpBond.end[0] - centre[0]) * scale) + (getWidth() / 2));
- yend = (int) (((centre[1] - tmpBond.end[1]) * scale) + (getHeight() / 2));
+ xend = (int) (((tmpBond.end[0] - centre[0]) * scale)
+ + (getWidth() / 2));
+ yend = (int) (((centre[1] - tmpBond.end[1]) * scale)
+ + (getHeight() / 2));
xmid = (xend + xstart) / 2;
ymid = (yend + ystart) / 2;
if (highlightBond1 != null && highlightBond1 == tmpBond)
{
- g.setColor(tmpBond.endCol.brighter().brighter().brighter()
- .brighter());
+ g.setColor(
+ tmpBond.endCol.brighter().brighter().brighter().brighter());
drawLine(g, xmid, ymid, xend, yend);
}
if (fatom != null)
{
- this.setToolTipText(chain.id + ":" + fatom.resNumber + " "
- + fatom.resName);
+ this.setToolTipText(
+ chain.id + ":" + fatom.resNumber + " " + fatom.resName);
}
else
{
g.setColor(Color.red);
if (n == 1)
{
- int xstart = (int) (((b.start[0] - centre[0]) * scale) + (getWidth() / 2));
- int ystart = (int) (((centre[1] - b.start[1]) * scale) + (getHeight() / 2));
+ int xstart = (int) (((b.start[0] - centre[0]) * scale)
+ + (getWidth() / 2));
+ int ystart = (int) (((centre[1] - b.start[1]) * scale)
+ + (getHeight() / 2));
g.drawString(b.at1.resName + "-" + b.at1.resNumber, xstart, ystart);
}
if (n == 2)
{
- int xstart = (int) (((b.end[0] - centre[0]) * scale) + (getWidth() / 2));
- int ystart = (int) (((centre[1] - b.end[1]) * scale) + (getHeight() / 2));
+ int xstart = (int) (((b.end[0] - centre[0]) * scale)
+ + (getWidth() / 2));
+ int ystart = (int) (((centre[1] - b.end[1]) * scale)
+ + (getHeight() / 2));
g.drawString(b.at2.resName + "-" + b.at2.resNumber, xstart, ystart);
}
{
tmpBond = bond;
- truex = (int) (((tmpBond.start[0] - centre[0]) * scale) + (getWidth() / 2));
+ truex = (int) (((tmpBond.start[0] - centre[0]) * scale)
+ + (getWidth() / 2));
if (Math.abs(truex - x) <= 2)
{
- int truey = (int) (((centre[1] - tmpBond.start[1]) * scale) + (getHeight() / 2));
+ int truey = (int) (((centre[1] - tmpBond.start[1]) * scale)
+ + (getHeight() / 2));
if (Math.abs(truey - y) <= 2)
{
// Still here? Maybe its the last bond
- truex = (int) (((tmpBond.end[0] - centre[0]) * scale) + (getWidth() / 2));
+ truex = (int) (((tmpBond.end[0] - centre[0]) * scale)
+ + (getWidth() / 2));
if (Math.abs(truex - x) <= 2)
{
- int truey = (int) (((tmpBond.end[1] - centre[1]) * scale) + (getHeight() / 2));
+ int truey = (int) (((tmpBond.end[1] - centre[1]) * scale)
+ + (getHeight() / 2));
if (Math.abs(truey - y) <= 2)
{