/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package MCview;\r
\r
import java.util.*;\r
\r
+public class Residue\r
+{\r
+ Vector atoms = new Vector();\r
+ int number;\r
+ int count;\r
+ int seqnumber;\r
\r
-public class Residue {\r
- Vector atoms = new Vector();\r
- int number;\r
- int count;\r
- int seqnumber;\r
+ public Residue(Vector atoms, int number, int count)\r
+ {\r
+ this.atoms = atoms;\r
+ this.number = number;\r
+ this.count = count;\r
+ }\r
\r
- public Residue(Vector atoms, int number, int count) {\r
- this.atoms = atoms;\r
- this.number = number;\r
- this.count = count;\r
+ public Atom findAtom(String name)\r
+ {\r
+ for (int i = 0; i < atoms.size(); i++)\r
+ {\r
+ if ( ( (Atom) atoms.elementAt(i)).name.equals(name))\r
+ {\r
+ return (Atom) atoms.elementAt(i);\r
+ }\r
}\r
\r
- public myAtom findAtom(String name) {\r
- for (int i = 0; i < atoms.size(); i++) {\r
- if (((myAtom) atoms.elementAt(i)).name.equals(name)) {\r
- return (myAtom) atoms.elementAt(i);\r
- }\r
- }\r
-\r
- return null;\r
- }\r
+ return null;\r
+ }\r
}\r