+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.analysis;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.SequenceI;
+import jalview.renderer.AnnotationRenderer;
+
import java.util.ArrayList;
import java.util.Arrays;
import java.util.BitSet;
import java.util.List;
import java.util.Map;
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.SequenceI;
-import jalview.renderer.AnnotationRenderer;
-
public class AlignmentAnnotationUtils
{
{
continue;
}
- if (forSequences != null
- && (aa.sequenceRef != null && forSequences
- .contains(aa.sequenceRef)))
+ if (forSequences != null && (aa.sequenceRef != null
+ && forSequences.contains(aa.sequenceRef)))
{
String calcId = aa.getCalcId();
.get(calcId);
if (groupLabelsForCalcId.containsKey(aa.graphGroup))
{
- if (!groupLabelsForCalcId.get(aa.graphGroup).contains(
- displayLabel))
+ if (!groupLabelsForCalcId.get(aa.graphGroup)
+ .contains(displayLabel))
{
groupLabelsForCalcId.get(aa.graphGroup).add(displayLabel);
}