import jalview.datamodel.AlignedCodon;
import jalview.datamodel.AlignedCodonFrame;
-import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
+import jalview.datamodel.SequenceMapping;
import jalview.datamodel.features.SequenceFeatures;
import jalview.io.gff.Gff3Helper;
import jalview.io.gff.SequenceOntologyI;
.findMappingsForSequence(proteinProduct, mappings);
for (AlignedCodonFrame acf : mappingsToPeptide)
{
- for (SequenceToSequenceMapping map : acf.getMappings())
+ for (SequenceMapping map : acf.getMappings())
{
Mapping mapping = map.getMapping();
if (mapping != aMapping