/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
boolean found = false;
int end = alignment.getHeight();
-
// /////////////////////////////////////////////
if (selection != null)
while (!found && (seqIndex < end))
{
seq = (Sequence) alignment.getSequenceAt(seqIndex);
-
+
if ((selection != null && selection.getSize() > 0)
&& !selection.getSequences(null).contains(seq))
{
{
searchResults.addResult(seq, res, res);
hasResults = true;
- //resIndex=seq.getLength();
+ // resIndex=seq.getLength();
// seqIndex++;
- if (!findAll) {
+ if (!findAll)
+ {
found = true;
break;
}