final private AlignmentView seqs;
private ScoreModelI scoreModel;
-
+
private SimilarityParamsI similarityParams;
public PCA(AlignmentView s, ScoreModelI sm, SimilarityParamsI options)
this.seqs = s;
this.similarityParams = options;
this.scoreModel = sm;
-
+
details.append("PCA calculation using " + sm.getName()
+ " sequence similarity matrix\n========\n\n");
}
q.printStackTrace();
details.append("\n*** Unexpected exception when performing PCA ***\n"
+ q.getLocalizedMessage());
- details.append("*** Matrices below may not be fully diagonalised. ***\n");
+ details.append(
+ "*** Matrices below may not be fully diagonalised. ***\n");
}
details.append(" --- New diagonalization matrix ---\n");