-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- *******************************************************************************/
-
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.api;
import jalview.datamodel.AlignmentI;
/**
* abstract interface implemented by alignment panels holding an alignment view
+ *
* @author JimP
- *
+ *
*/
-public interface AlignmentViewPanel
+public interface AlignmentViewPanel extends OOMHandlerI
{
+ AlignViewportI getAlignViewport();
+
AlignmentI getAlignment();
+
StructureSelectionManager getStructureSelectionManager();
+
+ /**
+ * repaint the alignment view after a datamodel update.
+ *
+ * @param updateOverview
+ * - if true, the overview panel will also be updated and repainted
+ */
+
+ void paintAlignment(boolean updateOverview);
+
+ /**
+ * automatically adjust annotation panel height for new annotation whilst
+ * ensuring the alignment is still visible.
+ */
+ void adjustAnnotationHeight();
+
+ FeatureRenderer getFeatureRenderer();
+
+ FeatureRenderer cloneFeatureRenderer();
+
+ /**
+ *
+ * @return displayed name for the view
+ */
+ String getViewName();
}