*/
package jalview.api;
+import java.util.List;
+
import jalview.datamodel.SearchResultsI;
import jalview.datamodel.SequenceI;
-import java.util.List;
-
/**
* An interface for searching for a pattern in an aligment
*/
* @param theSearchString
* @param caseSensitive
* @param searchDescription
+ * @param searchFeatureDesc
* @param ignoreHidden
* @return
*/
void findAll(String theSearchString, boolean caseSensitive,
- boolean searchDescription, boolean ignoreHidden);
+ boolean searchDescription, boolean searchFeatureDesc,
+ boolean ignoreHidden);
/**
* Finds the next match for the given search string (interpreted as a regular
* @param theSearchString
* @param caseSensitive
* @param searchDescription
+ * @param searchFeatureDesc
* @param ignoreHidden
* @return
*/
void findNext(String theSearchString, boolean caseSensitive,
- boolean searchDescription, boolean ignoreHidden);
+ boolean searchDescription, boolean searchFeatureDesc,
+ boolean ignoreHidden);
/**
* Returns the (possibly empty) list of sequences matched on sequence name or
*/
SearchResultsI getSearchResults();
+ void setFeatureRenderer(FeatureRenderer featureRenderer);
+
}
\ No newline at end of file