/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
extends Panel implements MouseListener,\r
MouseMotionListener,\r
KeyListener\r
-//RubberbandListener,\r
-//SequenceSelectionListener\r
{\r
RotatableMatrix idmat = new RotatableMatrix(3, 3);\r
RotatableMatrix objmat = new RotatableMatrix(3, 3);\r
RotatableMatrix rotmat = new RotatableMatrix(3, 3);\r
+ String tooltip;\r
+ int toolx, tooly;\r
\r
//RubberbandRectangle rubberband;\r
\r
float scalefactor = 1;\r
\r
AlignViewport av;\r
-// Controller controller;\r
+ boolean showLabels = false;\r
\r
+ public RotatableCanvas(AlignViewport av)\r
+ {\r
+ this.av = av;\r
+ }\r
\r
- public RotatableCanvas(AlignViewport av,\r
- Vector points, int npoint)\r
+ public void showLabels(boolean b)\r
+ {\r
+ showLabels = b;\r
+ repaint();\r
+ }\r
+\r
+ public void setPoints(Vector points, int npoint)\r
{\r
this.points = points;\r
this.npoint = npoint;\r
- this.av = av;\r
PaintRefresher.Register(this, av.alignment);\r
-//\r
+\r
prefsize = getPreferredSize();\r
orig = new float[npoint][3];\r
\r
return getPreferredSize();\r
}\r
\r
+ public void update(Graphics g)\r
+ {\r
+ paint(g);\r
+ }\r
public void paint(Graphics g)\r
{\r
- //Only create the image at the beginning -\r
- if ( (img == null) || (prefsize.width != getSize().width) ||\r
- (prefsize.height != getSize().height))\r
+ if (points == null)\r
+ {\r
+ g.setFont(new Font("Verdana", Font.PLAIN, 18));\r
+ g.drawString("Calculating PCA....", 20, getSize().height / 2);\r
+ }\r
+ else\r
{\r
- prefsize.width = getSize().width;\r
- prefsize.height = getSize().height;\r
\r
- scale = findScale();\r
+ //Only create the image at the beginning -\r
+ if ( (img == null) || (prefsize.width != getSize().width) ||\r
+ (prefsize.height != getSize().height))\r
+ {\r
+ prefsize.width = getSize().width;\r
+ prefsize.height = getSize().height;\r
\r
- // System.out.println("New scale = " + scale);\r
- img = createImage(getSize().width, getSize().height);\r
- ig = img.getGraphics();\r
+ scale = findScale();\r
\r
- }\r
+ // System.out.println("New scale = " + scale);\r
+ img = createImage(getSize().width, getSize().height);\r
+ ig = img.getGraphics();\r
\r
- drawBackground(ig, Color.black);\r
- drawScene(ig);\r
- if (drawAxes == true)\r
- {\r
- drawAxes(ig);\r
- }\r
+ }\r
+\r
+ drawBackground(ig, Color.black);\r
+ drawScene(ig);\r
+ if (drawAxes == true)\r
+ {\r
+ drawAxes(ig);\r
+ }\r
+\r
+ if(tooltip!=null)\r
+ {\r
+ ig.setColor(Color.red);\r
+ ig.drawString(tooltip, toolx, tooly);\r
+ }\r
\r
- g.drawImage(img, 0, 0, this);\r
+ g.drawImage(img, 0, 0, this);\r
+ }\r
}\r
\r
public void drawAxes(Graphics g)\r
\r
public void drawScene(Graphics g)\r
{\r
- boolean darker = false;\r
+ //boolean darker = false;\r
\r
int halfwidth = getSize().width / 2;\r
int halfheight = getSize().height / 2;\r
\r
if (av.getSelectionGroup() != null)\r
{\r
- if (av.getSelectionGroup().sequences.contains( ( (SequencePoint) points.\r
+ if (av.getSelectionGroup().getSequences(false).contains( ( (SequencePoint) points.\r
elementAt(i)).sequence))\r
{\r
g.setColor(Color.gray);\r
}\r
\r
g.fillRect(x - 3, y - 3, 6, 6);\r
- g.setColor(Color.red);\r
+ if (showLabels)\r
+ {\r
+ g.setColor(Color.red);\r
+ g.drawString( ( (SequencePoint) points.elementAt(i)).sequence.\r
+ getName(),\r
+ x - 3, y - 4);\r
+ }\r
}\r
-// //Now the rectangle\r
-// if (rectx2 != -1 && recty2 != -1) {\r
-// g.setColor(Color.white);\r
-//\r
-// g.drawRect(rectx1,recty1,rectx2-rectx1,recty2-recty1);\r
-// }\r
}\r
\r
public Dimension minimumsize()\r
\r
public void keyPressed(KeyEvent evt)\r
{\r
- requestFocus();\r
if (evt.getKeyCode() == KeyEvent.VK_UP)\r
{\r
scalefactor = (float) (scalefactor * 1.1);\r
if (av.getSelectionGroup() != null)\r
{\r
av.getSelectionGroup().addOrRemove(found, true);\r
+ av.getSelectionGroup().setEndRes(av.alignment.getWidth()-1);\r
PaintRefresher.Refresh(this, av.alignment);\r
}\r
else\r
{\r
av.setSelectionGroup(new SequenceGroup());\r
av.getSelectionGroup().addOrRemove(found, true);\r
- av.getSelectionGroup().setEndRes(av.alignment.getWidth());\r
+ av.getSelectionGroup().setEndRes(av.alignment.getWidth()-1);\r
\r
}\r
}\r
repaint();\r
}\r
\r
- // private void fireSequenceSelectionEvent(Selection sel) {\r
- // controller.handleSequenceSelectionEvent(new SequenceSelectionEvent(this,sel));\r
- //}\r
\r
public void mouseMoved(MouseEvent evt)\r
{\r
- // SequenceI found = findPoint(evt.getX(), evt.getY());\r
+ SequenceI found = findPoint(evt.getX(), evt.getY());\r
+ if(found==null)\r
+ tooltip = null;\r
+ else\r
+ {\r
+ tooltip = found.getName();\r
+ toolx = evt.getX();\r
+ tooly = evt.getY();\r
+ }\r
+ repaint();\r
}\r
\r
public void mouseDragged(MouseEvent evt)\r
{\r
mx = evt.getX();\r
my = evt.getY();\r
- //Check if this is a rectangle drawing drag\r
- if ( (evt.getModifiers() & InputEvent.BUTTON2_MASK) != 0)\r
- {\r
-// rectx2 = evt.getX();\r
-// recty2 = evt.getY();\r
- }\r
- else\r
- {\r
+\r
rotmat.setIdentity();\r
\r
rotmat.rotate( (float) (my - omy), 'x');\r
omy = my;\r
\r
paint(this.getGraphics());\r
- }\r
-\r
}\r
\r
public void rectSelect(int x1, int y1, int x2, int y2)\r
{\r
- boolean changedSel = false;\r
+ //boolean changedSel = false;\r
for (int i = 0; i < npoint; i++)\r
{\r
SequencePoint sp = (SequencePoint) points.elementAt(i);\r
{\r
if (av != null)\r
{\r
- if (!av.getSelectionGroup().sequences.contains(sp.sequence))\r
+ if (!av.getSelectionGroup().getSequences(false).contains(sp.sequence))\r
{\r
av.getSelectionGroup().addSequence(sp.sequence, true);\r
}\r
return null;\r
}\r
}\r
- /* public boolean handleRubberbandEvent(RubberbandEvent evt) {\r
- System.out.println("Rubberband handler called in RotatableCanvas with " +\r
- evt.getBounds());\r
-\r
- Rubberband rb = (Rubberband)evt.getSource();\r
-\r
- // Clear the current selection (instance variable)\r
- //if ((rb.getModifiers() & Event.SHIFT_MASK) == 0) {\r
- // clearSelection();\r
- //}\r
-\r
- if (rb.getComponent() == this) {\r
- Rectangle bounds = evt.getBounds();\r
- rectSelect(bounds.x,bounds.y,bounds.x+bounds.width,bounds.y+bounds.height);\r
- }\r
-\r
- redrawneeded = true;\r
- paint(this.getGraphics());\r
-\r
- return true;\r
- }*/\r
\r
}\r