/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.appletgui;
int x = (evt.getX() / av.getCharWidth()) + av.getStartRes();
final int res;
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
res = av.getColumnSelection().adjustForHiddenColumns(x);
}
{
av.hideColumns(res, res);
if (av.getSelectionGroup() != null
- && av.getSelectionGroup().getSize() == av.alignment
+ && av.getSelectionGroup().getSize() == av.getAlignment()
.getHeight())
{
av.setSelectionGroup(null);
av.getColumnSelection().addElement(res);
SequenceGroup sg = new SequenceGroup();
- for (int i = 0; i < av.alignment.getSequences().size(); i++)
+ for (int i = 0; i < av.getAlignment().getSequences().size(); i++)
{
- sg.addSequence(av.alignment.getSequenceAt(i), false);
+ sg.addSequence(av.getAlignment().getSequenceAt(i), false);
}
sg.setStartRes(res);
}
ap.paintAlignment(true);
+ av.sendSelection();
}
public void mouseReleased(MouseEvent evt)
int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
- if (res > av.alignment.getWidth())
+ if (res > av.getAlignment().getWidth())
{
- res = av.alignment.getWidth() - 1;
+ res = av.getAlignment().getWidth() - 1;
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
res = av.getColumnSelection().adjustForHiddenColumns(res);
}
stretchingGroup = false;
ap.paintAlignment(false);
+ av.sendSelection();
}
public void mouseDragged(MouseEvent evt)
res = 0;
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
res = av.getColumnSelection().adjustForHiddenColumns(res);
}
- if (res > av.alignment.getWidth())
+ if (res > av.getAlignment().getWidth())
{
- res = av.alignment.getWidth() - 1;
+ res = av.getAlignment().getWidth() - 1;
}
if (res < min)
public void mouseMoved(MouseEvent evt)
{
- if (!av.hasHiddenColumns)
+ if (!av.hasHiddenColumns())
{
return;
}
for (int i = 0; i < cs.size(); i++)
{
int sel = cs.columnAt(i);
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
sel = av.getColumnSelection().findColumnPosition(sel);
}
maxX = (i - startx + 1) * av.charWidth + fm.stringWidth(string);
}
- gg
- .drawLine(
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + 2,
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + (fm.getDescent() * 2));
+ gg.drawLine(
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + 2,
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + (fm.getDescent() * 2));
}
else
{
- gg
- .drawLine(
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + fm.getDescent(),
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + (fm.getDescent() * 2));
+ gg.drawLine(
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + fm.getDescent(),
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + (fm.getDescent() * 2));
}
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
gg.setColor(Color.blue);
int res;