+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.bin;
import jalview.util.Platform;
import javax.swing.Timer;
/**
- * Entry point for JalviewJS development.
+ * Entry point for JalviewJS development.
*
*
*
public class JalviewJS2
{
- static {
- /**
- * @j2sNative
- *
- * thisApplet.__Info.args =
- * ["open","examples/uniref50.fa","features",
- * "examples/exampleFeatures.txt"];
- */
-
+ static
+ {
/**
- * set space-delimited query parameters as arguments to Jalview main
+ * @ could do it this way:
*
- * @j2sNative
+ * j2sNative
*
- * var hr = decodeURI(document.location.href); var pos =
- * hr.indexOf("?"); if (pos > 0) { thisApplet.__Info.args =
- * hr.substring(pos+1).split(" "); }
+ * J2S.thisApplet.__Info.args = [ "open","examples/uniref50.fa",
+ * "features","examples/exampleFeatures.txt", "noannotation" ];
*/
}
public static void main(String[] args) throws Exception
{
+ if (args.length == 0)
+ {
+ args = new String[] {
+ // "headless",
+ "open", "examples/uniref50.fa",
+// "features",
+// "examples/exampleFeatures.txt"
+// , "noannotation"
+ //, "showoverview"
+ //, "png", "test-bh.png"
+ };
+ }
+
+ // String cmds = "nodisplay -open examples/uniref50.fa -sortbytree -props
+ // test/jalview/io/testProps.jvprops -colour zappo "
+ // + "-jabaws http://www.compbio.dundee.ac.uk/jabaws -nosortbytree "
+ // + "-features examples/testdata/plantfdx.features -annotations
+ // examples/testdata/plantfdx.annotations -tree
+ // examples/testdata/uniref50_test_tree";
+ // args = cmds.split(" ");
Jalview.main(args);
- //showFocusTimer();
-}
+ // showFocusTimer();
+ }
-protected static int focusTime = 0;
+ protected static int focusTime = 0;
private static void showFocusTimer()
{
}
}
-
}