/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.commands;
* Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
*/
-import jalview.datamodel.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
public class RemoveGapColCommand extends EditCommand
{
int startCol = -1, endCol = -1;
columnsDeleted = 0;
- edits = new Edit[0];
+ clearEdits();
boolean delete = true;
for (int i = start; i <= end; i++)
if (!delete && startCol > -1)
{
- this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, endCol
- - startCol, al, false, null);
+ this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+ endCol - startCol, al, false, null);
columnsDeleted += (endCol - startCol);
startCol = -1;
// This is for empty columns at the
// end of the alignment
- this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, end
- - startCol + 1, al, false, null);
+ this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+ end - startCol + 1, al, false, null);
columnsDeleted += (end - startCol + 1);
}