+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
-import java.util.List;
-
-public interface AnnotatedCollectionI
+public interface AnnotatedCollectionI extends SequenceCollectionI
{
/**
- * TODO: decide if null is a valid response if there is no annotation on the object
+ * TODO: decide if null is a valid response if there is no annotation on the
+ * object
+ *
* @return null
*/
AlignmentAnnotation[] getAlignmentAnnotation();
+ Iterable<AlignmentAnnotation> findAnnotation(String calcId);
+
+ Iterable<AlignmentAnnotation> findAnnotations(SequenceI seq,
+ String calcId, String label);
+
+ /**
+ * context for this annotated collection
+ *
+ * @return null or the collection upon which this collection is defined (e.g.
+ * alignment, parent group).
+ */
+ AnnotatedCollectionI getContext();
}