+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
import fr.orsay.lri.varna.models.rna.RNA;
public class SecondaryStructureAnnotation extends AlignmentAnnotation
{
-
- private static RNA _rna = null;
- public SecondaryStructureAnnotation (RNA rna)
- {
- super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
-
-
- _rna = rna;
- }
-
- public RNA getRNA()
- {
- return _rna;
- }
- public static Annotation[] getAnnotation(RNA rna)
- {
- Annotation[] ann = new Annotation[rna.getSize()];
- for(int i=0;i<ann.length;i++)
- {
- ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);;
- }
- return ann;
- }
+ private static RNA _rna = null;
+
+ public SecondaryStructureAnnotation(RNA rna)
+ {
+ super("Secondary Structure", "Un truc trop cool", getAnnotation(rna));
+
+ _rna = rna;
+ }
+
+ public RNA getRNA()
+ {
+ return _rna;
+ }
+
+ public static Annotation[] getAnnotation(RNA rna)
+ {
+ Annotation[] ann = new Annotation[rna.getSize()];
+ for (int i = 0; i < ann.length; i++)
+ {
+ ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);
+ ;
+ }
+ return ann;
+ }
}