/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.datamodel;
-import java.awt.*;
+import java.awt.Color;
/**
* DOCUMENT ME!
public class SequenceNode extends BinaryNode
{
/** DOCUMENT ME!! */
- public float dist;
+ public double dist;
/** DOCUMENT ME!! */
public int count;
/** DOCUMENT ME!! */
- public float height;
+ public double height;
/** DOCUMENT ME!! */
public float ycount;
* Creates a new SequenceNode object.
*
* @param val
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param parent
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param dist
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param name
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public SequenceNode(Object val, SequenceNode parent, float dist,
String name)
* Creates a new SequenceNode object.
*
* @param val
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param parent
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param name
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param dist
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param bootstrap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param dummy
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public SequenceNode(Object val, SequenceNode parent, String name,
float dist, int bootstrap, boolean dummy)
/**
* @param dummy
- * true if node is created for the representation of polytomous
- * trees
+ * true if node is created for the representation of polytomous trees
*/
public boolean isDummy()
{
* DOCUMENT ME!
*
* @param newstate
- * DOCUMENT ME!
+ * DOCUMENT ME!
*
* @return DOCUMENT ME!
*/
* DOCUMENT ME!
*
* @param Placeholder
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void setPlaceholder(boolean Placeholder)
{
{
char q = name.charAt(c);
if ('0' <= q && q <= '9')
+ {
continue;
+ }
return true;
}
}