/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.datamodel;
-import java.util.*;
+import java.util.Vector;
+/**
+ * Data model for an entry returned from a Uniprot query
+ *
+ * @see uniprot_mapping.xml
+ */
public class UniprotEntry
{
UniprotSequence sequence;
- Vector name;
+ Vector<String> name;
- Vector accession;
+ Vector<String> accession;
- Vector feature;
+ Vector<SequenceFeature> feature;
- Vector dbrefs;
+ Vector<PDBEntry> dbrefs;
UniprotProteinName protName;
- public void setAccession(Vector items)
+ public void setAccession(Vector<String> items)
{
accession = items;
}
- public void setFeature(Vector items)
+ public void setFeature(Vector<SequenceFeature> items)
{
feature = items;
}
- public Vector getFeature()
+ public Vector<SequenceFeature> getFeature()
{
return feature;
}
- public Vector getAccession()
+ public Vector<String> getAccession()
{
return accession;
}
return protName;
}
- public void setName(Vector na)
+ public void setName(Vector<String> na)
{
name = na;
}
- public Vector getName()
+ public Vector<String> getName()
{
return name;
}
sequence = seq;
}
- public Vector getDbReference()
+ public Vector<PDBEntry> getDbReference()
{
return dbrefs;
}
- public void setDbReference(Vector dbref)
+ public void setDbReference(Vector<PDBEntry> dbref)
{
this.dbrefs = dbref;
}