int endRes;\r
int startSeq;\r
int endSeq;\r
- boolean showDBPrefix = true;\r
boolean showJVSuffix = true;\r
boolean showText = true;\r
boolean showColourText = false;\r
\r
boolean ignoreGapsInConsensusCalculation = false;\r
\r
- boolean showTranslation = false;\r
-\r
boolean isDataset = false;\r
\r
\r
this.startSeq = 0;\r
this.endSeq = alignment.getHeight() - 1;\r
\r
- showDBPrefix = Cache.getDefault("SHOW_DBPREFIX", true);\r
showJVSuffix = Cache.getDefault("SHOW_JVSUFFIX", true);\r
showAnnotation = Cache.getDefault("SHOW_ANNOTATIONS", true);\r
showConservation = Cache.getDefault("SHOW_CONSERVATION", true);\r
showJVSuffix = b;\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @return DOCUMENT ME!\r
- */\r
- public boolean getShowDBPrefix()\r
- {\r
- return showDBPrefix;\r
- }\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param b DOCUMENT ME!\r
- */\r
- public void setShowDBPrefix(boolean b)\r
- {\r
- showDBPrefix = b;\r
- }\r
\r
/**\r
* DOCUMENT ME!\r
return ignoreGapsInConsensusCalculation;\r
}\r
\r
- public void showTranslation(boolean b)\r
- {\r
- this.showTranslation = b;\r
- }\r
-\r
- public boolean getShowTranslation()\r
- {\r
- return showTranslation;\r
- }\r
-\r
public void setDataset(boolean b)\r
{\r
isDataset = b;\r