/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
public class AnnotationChooser extends JPanel
{
- private static final Font CHECKBOX_FONT = new Font("Serif", Font.BOLD, 12);
+ private static final Font CHECKBOX_FONT = new Font("Serif", Font.BOLD,
+ 12);
private static final int MY_FRAME_WIDTH = 600;
private boolean applyToUnselectedSequences;
// currently selected 'annotation type' checkboxes
- private Map<String, String> selectedTypes = new HashMap<String, String>();
+ private Map<String, String> selectedTypes = new HashMap<>();
/**
* Constructor.
// this.ap.alabels.setSize(this.ap.alabels.getSize().width,
// this.ap.annotationPanel.getSize().height);
// this.ap.validate();
- this.ap.paintAlignment(true);
+ this.ap.paintAlignment(true, false);
}
/**
// this.ap.alabels.setSize(this.ap.alabels.getSize().width,
// this.ap.annotationPanel.getSize().height);
// this.ap.validate();
- this.ap.paintAlignment(true);
+ this.ap.paintAlignment(true, false);
}
/**
* type which are in the application scope (all, selected or unselected
* sequences).
*
- * @param type
+ * @param dataSourceType
*/
protected void changeShowHide_actionPerformed()
{
this.ap.updateAnnotation();
// this.ap.annotationPanel.adjustPanelHeight();
- this.ap.paintAlignment(true);
+ this.ap.paintAlignment(true, false);
}
/**
public static List<String> getAnnotationTypes(AlignmentI alignment,
boolean sequenceSpecificOnly)
{
- List<String> result = new ArrayList<String>();
+ List<String> result = new ArrayList<>();
for (AlignmentAnnotation aa : alignment.getAlignmentAnnotation())
{
if (!sequenceSpecificOnly || aa.sequenceRef != null)