Merge remote-tracking branch 'origin/Tcoffee_JAL-1065' into develop

[jalview.git] / src / jalview / gui / AnnotationPanel.java

diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index 20d4d29..2faba52 100755 (executable)
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -375,12 +375,13 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
   {
     String collatedInput = "";
     String last = "";
+    ColumnSelection viscols=av.getColumnSelection();
     // TODO: refactor and save av.getColumnSelection for efficiency
     for (int i = 0; i < columnSelection.size(); i++)
     {
       int index = columnSelection.columnAt(i);
       // always check for current display state - just in case
-      if (!av.getColumnSelection().isVisible(index))
+      if (!viscols.isVisible(index))
         continue;
       String tlabel = null;
       if (anot[index] != null)