*/
protected boolean sliderDragging = false;
- protected JComboBox<String> threshold = new JComboBox<String>();
+ protected JComboBox<String> threshold = new JComboBox<>();
protected JComboBox<String> annotations;
* @param viewport
* @param alignPanel
*/
- public AnnotationRowFilter(AlignViewport viewport, final AlignmentPanel alignPanel)
+ public AnnotationRowFilter(AlignViewport viewport,
+ final AlignmentPanel alignPanel)
{
this.av = viewport;
this.ap = alignPanel;
});
}
+ /**
+ * update the text field from the threshold slider. preserves state of
+ * 'adjusting' so safe to call in init.
+ */
protected void setThresholdValueText()
{
+ boolean oldadj = adjusting;
adjusting = true;
if (percentThreshold.isSelected())
{
{
thresholdValue.setText((slider.getValue() / 1000f) + "");
}
- adjusting = false;
+ adjusting = oldadj;
}
+
protected void addSliderMouseListeners()
{
@Override
public void mouseReleased(MouseEvent evt)
{
- if (sliderDragging)
- {
- sliderDragging = false;
- valueChanged(true);
- }
- ap.paintAlignment(true);
+ sliderDragReleased();
}
});
}
-/**
- * Builds and returns a list of menu items (display text) for choice of
- * annotation. Also builds maps between annotations, their positions in the
- * list, and their display labels in the list.
- *
- * @param isSeqAssociated
- * @return
- */
+ /**
+ * Builds and returns a list of menu items (display text) for choice of
+ * annotation. Also builds maps between annotations, their positions in the
+ * list, and their display labels in the list.
+ *
+ * @param isSeqAssociated
+ * @return
+ */
public Vector<String> getAnnotationItems(boolean isSeqAssociated)
{
- annotationLabels = new HashMap<AlignmentAnnotation, String>();
+ annotationLabels = new HashMap<>();
- Vector<String> list = new Vector<String>();
+ Vector<String> list = new Vector<>();
int index = 1;
- int[] anmap = new int[av.getAlignment().getAlignmentAnnotation().length];
+ int[] anmap = new int[av.getAlignment()
+ .getAlignmentAnnotation().length];
seqAssociated.setEnabled(false);
- for (int i = 0; i < av.getAlignment().getAlignmentAnnotation().length; i++)
+ for (int i = 0; i < av.getAlignment()
+ .getAlignmentAnnotation().length; i++)
{
AlignmentAnnotation annotation = av.getAlignment()
.getAlignmentAnnotation()[i];
public void cancel_actionPerformed()
{
reset();
- ap.paintAlignment(true);
+ ap.paintAlignment(true, true);
try
{
frame.setClosed(true);
try
{
float f = Float.parseFloat(thresholdValue.getText());
- if (percentThreshold.isEnabled())
+ if (percentThreshold.isSelected())
{
- slider.setValue(slider.getMinimum()
- + ((int) ((f / 100f) * (slider.getMaximum() - slider
- .getMinimum()))));
+ slider.setValue(slider.getMinimum() + ((int) ((f / 100f)
+ * (slider.getMaximum() - slider.getMinimum()))));
}
else
{
}
float thr = annotation.threshold.value;
- for (int i = 0; i < av.getAlignment().getAlignmentAnnotation().length; i++)
+ for (int i = 0; i < av.getAlignment()
+ .getAlignmentAnnotation().length; i++)
{
- AlignmentAnnotation aa = av.getAlignment().getAlignmentAnnotation()[i];
+ AlignmentAnnotation aa = av.getAlignment()
+ .getAlignmentAnnotation()[i];
if (aa.label.equals(annotation.label)
&& (annotation.getCalcId() == null ? aa.getCalcId() == null
: annotation.getCalcId().equals(aa.getCalcId())))
this.currentAnnotation = annotation;
}
+ /**
+ * update associated view model and trigger any necessary repaints.
+ *
+ * @param updateAllAnnotation
+ */
protected abstract void valueChanged(boolean updateAllAnnotation);
protected abstract void updateView();
selectedAnnotationChanged();
}
});
- annotations.setToolTipText(MessageManager
- .getString("info.select_annotation_row"));
+ annotations.setToolTipText(
+ MessageManager.getString("info.select_annotation_row"));
threshold.addActionListener(new ActionListener()
{
}
});
- percentThreshold.setText(MessageManager.getString("label.as_percentage"));
+ percentThreshold
+ .setText(MessageManager.getString("label.as_percentage"));
percentThreshold.addActionListener(new ActionListener()
{
@Override
{
this.annotations = anns;
}
+
+ protected void sliderDragReleased()
+ {
+ if (sliderDragging)
+ {
+ sliderDragging = false;
+ valueChanged(true);
+ }
+ }
}