// TODO: consider waiting until the structure/view is fully loaded before
// displaying
this.getContentPane().add(renderPanel, java.awt.BorderLayout.CENTER);
+ this.invalidate();
+ this.pack();
jalview.gui.Desktop.addInternalFrame(this, jmb.getViewerTitle(),
getBounds().width, getBounds().height);
if (scriptWindow == null)
} catch (Exception ex)
{
Cache.log.error("Couldn't open Jmol viewer!", ex);
+ ex.printStackTrace();
+ return;
}
}
else
new OOMWarning("When trying to add structures to the Jmol viewer!",
oomerror);
Cache.log.debug("File locations are " + filesString);
+ return;
} catch (Exception ex)
{
Cache.log.error("Couldn't add files to Jmol viewer!", ex);
+ ex.printStackTrace();
+ return;
}
}
}
if (errormsgs.length() > 0)
{
- JvOptionPane.showInternalMessageDialog(Desktop.desktop,
+ JvOptionPane.showInternalMessageDialog(Desktop.getDesktopPane(),
MessageManager.formatMessage(
"label.pdb_entries_couldnt_be_retrieved", new String[]
{ errormsgs.toString() }),
*
* @param type
*/
+ @Override
public void makePDBImage(ImageMaker.TYPE type)
{
int width = getWidth();
{
try
{
- BrowserLauncher
- .openURL("http://jmol.sourceforge.net/docs/JmolUserGuide/");
+ BrowserLauncher // BH 2018
+ .openURL("http://wiki.jmol.org");//http://jmol.sourceforge.net/docs/JmolUserGuide/");
} catch (Exception ex)
{
}
validate();
}
+ @SuppressWarnings("serial")
class RenderPanel extends JPanel
{
final Dimension currentSize = new Dimension();
+ public RenderPanel()
+ {
+ setPreferredSize(
+ Cache.getDefaultDim(Preferences.STRUCTURE_DIMENSIONS,
+ Preferences.DEFAULT_STRUCTURE_DIMENSIONS));
+ // BH 2019.07.12 suggesting 600,600; current is something like 347 x 323
+ }
+
@Override
public void paintComponent(Graphics g)
{
getSize(currentSize);
-
+ // BH: Note that this size could be slightly different from the size set
+ // prior to packing.
if (jmb != null && jmb.hasFileLoadingError())
{
g.setColor(Color.black);