StructureSelectionManagerProvider ssmp)
{
return associatePdbWithSeq(choice, file, sequence, prompt, ssmp,
- TFType.DEFAULT, null);
+ TFType.DEFAULT, null, true);
}
public PDBEntry associatePdbWithSeq(String choice, DataSourceType file,
SequenceI sequence, boolean prompt,
StructureSelectionManagerProvider ssmp, TFType tft,
- String paeFilename)
+ String paeFilename, boolean doXferSettings)
{
PDBEntry entry = new PDBEntry();
StructureFile pdbfile = StructureSelectionManager
.getStructureSelectionManager(ssmp)
.setMapping(false, new SequenceI[]
- { sequence }, null, choice, file, tft, paeFilename);
+ { sequence }, null, choice, file, tft, paeFilename,
+ doXferSettings);
if (pdbfile == null)
{
// stacktrace already thrown so just return