*/
package jalview.gui;
+import jalview.datamodel.SearchResultMatchI;
+import jalview.datamodel.SearchResultsI;
+import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.SequenceI;
+import jalview.jbgui.GFinder;
+import jalview.util.MessageManager;
+import jalview.viewmodel.AlignmentViewport;
+
import java.awt.event.ActionEvent;
import java.awt.event.KeyEvent;
import java.util.Vector;
import javax.swing.JOptionPane;
import javax.swing.KeyStroke;
-import jalview.datamodel.SearchResults;
-import jalview.datamodel.SequenceFeature;
-import jalview.datamodel.SequenceI;
-import jalview.jbgui.GFinder;
-import jalview.util.MessageManager;
-import jalview.viewmodel.AlignmentViewport;
-
/**
* Performs the menu option for searching the alignment, for the next or all
* matches. If matches are found, they are highlighted, and the user has the
int resIndex = -1;
- SearchResults searchResults;
+ SearchResultsI searchResults;
/**
* Creates a new Finder object with no associated viewport or panel.
KeyStroke.getKeyStroke(KeyEvent.VK_ESCAPE, 0), "Cancel");
getRootPane().getActionMap().put("Cancel", new AbstractAction()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
escapeActionPerformed();
*
* @param e
*/
+ @Override
public void findNext_actionPerformed(ActionEvent e)
{
if (getFocusedViewport())
*
* @param e
*/
+ @Override
public void findAll_actionPerformed(ActionEvent e)
{
if (getFocusedViewport())
* @param e
* DOCUMENT ME!
*/
+ @Override
public void createNewGroup_actionPerformed(ActionEvent e)
{
SequenceI[] seqs = new SequenceI[searchResults.getSize()];
SequenceFeature[] features = new SequenceFeature[searchResults
.getSize()];
- for (int i = 0; i < searchResults.getSize(); i++)
+ int i = 0;
+ for (SearchResultMatchI match : searchResults.getResults())
{
- seqs[i] = searchResults.getResultSequence(i).getDatasetSequence();
+ seqs[i] = match.getSequence().getDatasetSequence();
features[i] = new SequenceFeature(textfield.getText().trim(),
- "Search Results", null, searchResults.getResultStart(i),
- searchResults.getResultEnd(i), "Search Results");
+ "Search Results", null, match.getStart(), match.getEnd(),
+ "Search Results");
+ i++;
}
if (ap.getSeqPanel().seqCanvas.getFeatureRenderer().amendFeatures(seqs,
searchResults = finder.getSearchResults(); // find(regex,
// caseSensitive.isSelected(), )
- Vector idMatch = finder.getIdMatch();
+ Vector<SequenceI> idMatch = finder.getIdMatch();
boolean haveResults = false;
// set or reset the GUI
if ((idMatch.size() > 0))
// 'SelectRegion' selection
if (!haveResults)
{
- JOptionPane.showInternalMessageDialog(this,
+ JvOptionPane.showInternalMessageDialog(this,
MessageManager.getString("label.finished_searching"), null,
- JOptionPane.INFORMATION_MESSAGE);
+ JvOptionPane.INFORMATION_MESSAGE);
resIndex = -1;
seqIndex = 0;
}
message += searchResults.getSize()
+ " subsequence matches found.";
}
- JOptionPane.showInternalMessageDialog(this, message, null,
- JOptionPane.INFORMATION_MESSAGE);
+ JvOptionPane.showInternalMessageDialog(this, message, null,
+ JvOptionPane.INFORMATION_MESSAGE);
resIndex = -1;
seqIndex = 0;
}
{
return false;
}
- JOptionPane.showInternalMessageDialog(this, error,
+ JvOptionPane.showInternalMessageDialog(this, error,
MessageManager.getString("label.invalid_search"), // $NON-NLS-1$
- JOptionPane.ERROR_MESSAGE);
+ JvOptionPane.ERROR_MESSAGE);
return true;
}