*/
package jalview.gui;
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.Sequence;
-import jalview.datamodel.SequenceFeature;
-import jalview.datamodel.SequenceGroup;
-import jalview.datamodel.SequenceI;
-import jalview.gui.SeqPanel.MousePos;
-import jalview.io.SequenceAnnotationReport;
-import jalview.util.MessageManager;
-import jalview.util.Platform;
-import jalview.viewmodel.AlignmentViewport;
-import jalview.viewmodel.ViewportRanges;
-
import java.awt.BorderLayout;
import java.awt.event.MouseEvent;
import java.awt.event.MouseListener;
import javax.swing.SwingUtilities;
import javax.swing.ToolTipManager;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.gui.SeqPanel.MousePos;
+import jalview.io.SequenceAnnotationReport;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+import jalview.viewmodel.AlignmentViewport;
+import jalview.viewmodel.ViewportRanges;
+
/**
* This panel hosts alignment sequence ids and responds to mouse clicks on them,
* as well as highlighting ids matched by a search from the Find menu.
ScrollThread scrollThread = null;
- String linkImageURL;
-
int offy;
// int width;
this.av = av;
alignPanel = parent;
setIdCanvas(new IdCanvas(av));
- linkImageURL = getClass().getResource("/images/link.gif").toString();
- seqAnnotReport = new SequenceAnnotationReport(linkImageURL);
+ seqAnnotReport = new SequenceAnnotationReport(true);
setLayout(new BorderLayout());
add(getIdCanvas(), BorderLayout.CENTER);
addMouseListener(this);
}
Sequence sq = (Sequence) av.getAlignment().getSequenceAt(pos.seqIndex);
-
- /*
- * build a new links menu based on the current links
- * and any non-positional features
- */
- List<SequenceFeature> features = null;
if (sq != null)
{
- List<String> nlinks = Preferences.sequenceUrlLinks.getLinksForMenu();
- features = sq.getFeatures().getNonPositionalFeatures();
- for (SequenceFeature sf : features)
- {
- if (sf.links != null)
- {
- nlinks.addAll(sf.links);
- }
- }
+ PopupMenu pop = new PopupMenu(alignPanel, sq,
+ Preferences.getGroupURLLinks());
+ pop.show(this, e.getX(), e.getY());
}
-
- PopupMenu pop = new PopupMenu(alignPanel, sq, features,
- Preferences.getGroupURLLinks());
- pop.show(this, e.getX(), e.getY());
}
/**