public class IdPanel extends JPanel implements MouseListener,
MouseMotionListener, MouseWheelListener
{
- protected IdCanvas idCanvas;
+ private IdCanvas idCanvas;
protected AlignViewport av;
{
this.av = av;
alignPanel = parent;
- idCanvas = new IdCanvas(av);
+ setIdCanvas(new IdCanvas(av));
linkImageURL = getClass().getResource("/images/link.gif").toString();
seqAnnotReport = new SequenceAnnotationReport(linkImageURL);
setLayout(new BorderLayout());
- add(idCanvas, BorderLayout.CENTER);
+ add(getIdCanvas(), BorderLayout.CENTER);
addMouseListener(this);
addMouseMotionListener(this);
addMouseWheelListener(this);
@Override
public void mouseMoved(MouseEvent e)
{
- SeqPanel sp = alignPanel.seqPanel;
+ SeqPanel sp = alignPanel.getSeqPanel();
int seq = Math.max(0, sp.findSeq(e));
if (seq > -1 && seq < av.getAlignment().getHeight())
{
seqAnnotReport
.createSequenceAnnotationReport(tip, sequence,
av.isShowDbRefs(), av.isShowNpFeats(),
- sp.seqCanvas.fr.minmax);
+ sp.seqCanvas.fr.getMinMax());
setToolTipText("<html>" + sequence.getDisplayId(true) + " "
+ tip.toString() + "</html>");
}
{
mouseDragging = true;
- int seq = Math.max(0, alignPanel.seqPanel.findSeq(e));
+ int seq = Math.max(0, alignPanel.getSeqPanel().findSeq(e));
if (seq < lastid)
{
return;
}
- int seq = alignPanel.seqPanel.findSeq(e);
+ int seq = alignPanel.getSeqPanel().findSeq(e);
String url = null;
int i = 0;
String id = av.getAlignment().getSequenceAt(seq).getName();
return;
}
- int seq = alignPanel.seqPanel.findSeq(e);
+ int seq = alignPanel.getSeqPanel().findSeq(e);
if (SwingUtilities.isRightMouseButton(e))
{
*/
public void highlightSearchResults(List<SequenceI> list)
{
- idCanvas.setHighlighted(list);
+ getIdCanvas().setHighlighted(list);
if (list == null)
{
}
}
+ public IdCanvas getIdCanvas()
+ {
+ return idCanvas;
+ }
+
+ public void setIdCanvas(IdCanvas idCanvas)
+ {
+ this.idCanvas = idCanvas;
+ }
+
// this class allows scrolling off the bottom of the visible alignment
class ScrollThread extends Thread
{