// collect matching db-refs
DBRefEntry[] dbr = jalview.util.DBRefUtils.selectRefs(
- seq.getDBRef(), new String[] { urlLink.getTarget() });
+ seq.getDBRefs(), new String[] { urlLink.getTarget() });
// collect id string too
String id = seq.getName();
String descr = seq.getDescription();
{
sqi = sqi.getDatasetSequence();
}
- DBRefEntry[] dbr = sqi.getDBRef();
+ DBRefEntry[] dbr = sqi.getDBRefs();
if (dbr != null && dbr.length > 0)
{
for (int d = 0; d < dbr.length; d++)
@Override
public void run()
{
+ boolean isNuclueotide = ap.alignFrame.getViewport().getAlignment()
+ .isNucleotide();
- new jalview.ws.DBRefFetcher(sequences, ap.alignFrame)
+ new jalview.ws.DBRefFetcher(sequences, ap.alignFrame, null,
+ ap.alignFrame.featureSettings, isNuclueotide)
.fetchDBRefs(false);
+
}
});