*/\r
package jalview.gui;\r
\r
-import jalview.bin.*;\r
-\r
import jalview.io.*;\r
\r
import jalview.jbgui.*;\r
Desktop.addInternalFrame(frame, "Preferences", 480, 390);\r
frame.setMinimumSize(new Dimension(480,390));\r
\r
- fullID.setSelected( Cache.getDefault("SHOW_FULL_ID", true));\r
+ dbRef.setSelected( Cache.getDefault("SHOW_DBREF", true));\r
+ seqLimit.setSelected( Cache.getDefault("SHOW_JVSUFFIX", true));\r
fullScreen.setSelected( Cache.getDefault("SHOW_FULLSCREEN", false));\r
- annotations.setSelected( Cache.getDefault("SHOW_FULL_ID", true));\r
- conservation.setEnabled( Cache.getDefault("SHOW_ANNOTATIONS", true));\r
+ annotations.setSelected( Cache.getDefault("SHOW_ANNOTATIONS", true));\r
\r
+ conservation.setEnabled( Cache.getDefault("SHOW_ANNOTATIONS", true));\r
quality.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true));\r
identity.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true));\r
\r
startupFileTextfield.setText(Cache.getDefault("STARTUP_FILE",\r
"http://www.jalview.org/examples/exampleFile.jar"));\r
\r
+ sortby.addItem("No sort");\r
+ sortby.addItem("Id");\r
+ sortby.addItem("Pairwise Identity");\r
+ sortby.setSelectedItem( Cache.getDefault("SORT_ALIGNMENT", "No sort") );\r
+\r
+ epsRendering.addItem("Prompt each time");\r
+ epsRendering.addItem("Lineart");\r
+ epsRendering.addItem("Text");\r
+ epsRendering.setSelectedItem( Cache.getDefault("EPS_RENDERING", "Prompt each time"));\r
+\r
+ blcjv.setSelected( Cache.getDefault("BLC_JVSUFFIX", true) );\r
+ clustaljv.setSelected( Cache.getDefault("CLUSTAL_JVSUFFIX", true) );\r
+ fastajv.setSelected( Cache.getDefault("FASTA_JVSUFFIX", true) );\r
+ msfjv.setSelected( Cache.getDefault("MSF_JVSUFFIX", true) );\r
+ pfamjv.setSelected( Cache.getDefault("PFAM_JVSUFFIX", true) );\r
+ pileupjv.setSelected( Cache.getDefault("PILEUP_JVSUFFIX", true) );\r
+ pirjv.setSelected( Cache.getDefault("PIR_JVSUFFIX", true) );\r
+\r
/****************************************************\r
* Set up Connections\r
*/\r
public void ok_actionPerformed(ActionEvent e)\r
{\r
\r
- Cache.applicationProperties.setProperty("SHOW_FULL_ID", Boolean.toString(fullID.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_DBREF", Boolean.toString(dbRef.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_JVSUFFIX", Boolean.toString(seqLimit.isSelected()));\r
Cache.applicationProperties.setProperty("SHOW_FULLSCREEN", Boolean.toString(fullScreen.isSelected()));\r
\r
Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS", Boolean.toString(annotations.isSelected()));\r
Cache.applicationProperties.setProperty("STARTUP_FILE", startupFileTextfield.getText());\r
Cache.applicationProperties.setProperty("SHOW_STARTUP_FILE", Boolean.toString(startupCheckbox.isSelected()));\r
\r
+ Cache.applicationProperties.setProperty("SORT_ALIGNMENT", sortby.getSelectedItem().toString() );\r
+\r
+ if(epsRendering.getSelectedItem().equals("Prompt each time"))\r
+ Cache.applicationProperties.remove("EPS_RENDERING");\r
+ else\r
+ Cache.applicationProperties.setProperty("EPS_RENDERING", epsRendering.getSelectedItem().toString());\r
+\r
if(defaultBrowser.getText().trim().length()<1)\r
Cache.applicationProperties.remove("DEFAULT_BROWSER");\r
else\r
}\r
\r
\r
+ Cache.applicationProperties.setProperty("BLC_JVSUFFIX", Boolean.toString(blcjv.isSelected()) );\r
+ Cache.applicationProperties.setProperty("CLUSTAL_JVSUFFIX", Boolean.toString(clustaljv.isSelected()) );\r
+ Cache.applicationProperties.setProperty("FASTA_JVSUFFIX", Boolean.toString(fastajv.isSelected()) );\r
+ Cache.applicationProperties.setProperty("MSF_JVSUFFIX", Boolean.toString(msfjv.isSelected()) );\r
+ Cache.applicationProperties.setProperty("PFAM_JVSUFFIX", Boolean.toString(pfamjv.isSelected()) );\r
+ Cache.applicationProperties.setProperty("PILEUP_JVSUFFIX", Boolean.toString(pileupjv.isSelected()) );\r
+ Cache.applicationProperties.setProperty("PIR_JVSUFFIX", Boolean.toString(pirjv.isSelected()) );\r
+\r
\r
Cache.saveProperties();\r
try\r