/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.gui;
-import java.util.*;
-
-import java.awt.event.*;
-import javax.swing.*;
-import javax.swing.event.*;
-
import jalview.analysis.AlignSeq;
-import jalview.commands.*;
-import jalview.datamodel.*;
-import jalview.jbgui.*;
+import jalview.commands.CommandI;
+import jalview.commands.EditCommand;
+import jalview.commands.EditCommand.Action;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.jbgui.GSliderPanel;
import jalview.util.MessageManager;
+import java.awt.event.ActionEvent;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Stack;
+import java.util.Vector;
+
+import javax.swing.JInternalFrame;
+import javax.swing.JProgressBar;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
+import javax.swing.event.InternalFrameAdapter;
+import javax.swing.event.InternalFrameEvent;
+
/**
* DOCUMENT ME!
*
AlignmentPanel ap;
- Stack historyList = new Stack(); // simpler than synching with alignFrame.
+ Stack<CommandI> historyList = new Stack<CommandI>();
+
+ // simpler than synching with alignFrame.
float[] redundancy;
{
public void internalFrameClosing(InternalFrameEvent evt)
{
- ap.idPanel.idCanvas.setHighlighted(null);
+ ap.getIdPanel().getIdCanvas().setHighlighted(null);
}
});
progress.setVisible(false);
progress = null;
- label.setText(MessageManager.getString("label.enter_redundancy_thereshold"));
+ label.setText(MessageManager
+ .getString("label.enter_redundancy_threshold"));
slider.setVisible(true);
applyButton.setEnabled(true);
valueField.setVisible(true);
redundantSequences.add(originalSequences[i]);
}
}
- ap.idPanel.idCanvas.setHighlighted(redundantSequences);
+ ap.getIdPanel().getIdCanvas().setHighlighted(redundantSequences);
}
/**
}
}
- EditCommand cut = new EditCommand(MessageManager.getString("action.remove_redundancy"),
- EditCommand.CUT, deleted, 0, width, ap.av.getAlignment());
+ EditCommand cut = new EditCommand(
+ MessageManager.getString("action.remove_redundancy"),
+ Action.CUT, deleted, 0, width, ap.av.getAlignment());
for (int i = 0; i < del.size(); i++)
{
ap.alignFrame.addHistoryItem(cut);
PaintRefresher.Refresh(this, ap.av.getSequenceSetId(), true, true);
- ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
+ ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
+ .getSequences());
}
}
*/
public void undoButton_actionPerformed(ActionEvent e)
{
- if(historyList == null || historyList.isEmpty()){
- undoButton.setEnabled(false);
- return;
+ if (historyList == null || historyList.isEmpty())
+ {
+ undoButton.setEnabled(false);
+ return;
}
-
- CommandI command = (CommandI) historyList.pop();
- if (ap.av.historyList.contains(command))
+
+ CommandI command = historyList.pop();
+ if (ap.av.getHistoryList().contains(command))
{
command.undoCommand(af.getViewAlignments());
- ap.av.historyList.remove(command);
- ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
+ ap.av.getHistoryList().remove(command);
+ ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
+ .getSequences());
af.updateEditMenuBar();
}