/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.gui;
* DOCUMENT ME!
*
* @param g
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void paintComponent(Graphics g1)
{
* DOCUMENT ME!
*
* @param g
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void drawAxes(Graphics g)
{
* DOCUMENT ME!
*
* @param g
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param col
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void drawBackground(Graphics g, Color col)
{
* DOCUMENT ME!
*
* @param g
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void drawScene(Graphics g1)
{
if (av.getSelectionGroup() != null)
{
- if (av.getSelectionGroup().getSequences(null).contains(
- ((SequencePoint) points.elementAt(i)).sequence))
+ if (av.getSelectionGroup().getSequences(null)
+ .contains(((SequencePoint) points.elementAt(i)).sequence))
{
g.setColor(Color.gray);
}
if (showLabels)
{
g.setColor(Color.red);
- g.drawString(((SequencePoint) points.elementAt(i)).sequence
- .getName(), x - 3, y - 4);
+ g.drawString(
+ ((SequencePoint) points.elementAt(i)).sequence.getName(),
+ x - 3, y - 4);
}
}
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void keyTyped(KeyEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void keyReleased(KeyEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void keyPressed(KeyEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void mouseClicked(MouseEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void mouseEntered(MouseEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void mouseExited(MouseEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void mouseReleased(MouseEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void mousePressed(MouseEvent evt)
{
* DOCUMENT ME!
*
* @param evt
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void mouseDragged(MouseEvent evt)
{
* DOCUMENT ME!
*
* @param x1
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param y1
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param x2
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param y2
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void rectSelect(int x1, int y1, int x2, int y2)
{
{
if (av != null)
{
- if (!av.getSelectionGroup().getSequences(null).contains(
- sp.sequence))
+ if (!av.getSelectionGroup().getSequences(null)
+ .contains(sp.sequence))
{
av.getSelectionGroup().addSequence(sp.sequence, true);
}
* DOCUMENT ME!
*
* @param x
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param y
- * DOCUMENT ME!
+ * DOCUMENT ME!
*
* @return DOCUMENT ME!
*/
{ ap };
}
}
+
+ /**
+ *
+ * @return x,y,z positions of point s (index into points) under current
+ * transform.
+ */
+ public double[] getPointPosition(int s)
+ {
+ double pts[] = new double[3];
+ float[] p = ((SequencePoint) points.elementAt(s)).coord;
+ pts[0] = p[0];
+ pts[1] = p[1];
+ pts[2] = p[2];
+ return pts;
+ }
+
}