-package jalview.gui;\r
-\r
-import java.awt.*;\r
-import java.awt.event.*;\r
-\r
-import javax.swing.*;\r
-\r
-public class ScalePanel extends JPanel\r
-{\r
-\r
- protected ScaleCanvas scaleCanvas;\r
-\r
- protected int offy;\r
- public int width;\r
-\r
- protected AlignViewport av;\r
-\r
- public ScalePanel(AlignViewport av) {\r
- this.av = av;\r
-\r
- scaleCanvas = new ScaleCanvas(av);\r
- setLayout(new BorderLayout());\r
- add(scaleCanvas, BorderLayout.CENTER);\r
- addMouseListener(new MouseAdapter()\r
- {\r
- public void mousePressed(MouseEvent evt)\r
- {\r
- doMousePressed(evt);\r
- }\r
- });\r
- }\r
-\r
- public Dimension getMinimumSize() {\r
- return scaleCanvas.getMinimumSize();\r
- }\r
-\r
- public Dimension getPreferredSize() {\r
- return scaleCanvas.getPreferredSize();\r
- }\r
-\r
- public void doMousePressed(MouseEvent evt) {\r
- int x = evt.getX();\r
- int res = x/(int)av.getCharWidth() + av.getStartRes();\r
-\r
- if (! av.getColumnSelection().contains(res))\r
- av.getColumnSelection().addElement(res);\r
- else\r
- av.getColumnSelection().removeElement(res);\r
-\r
- repaint();\r
- }\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.gui;
+
+import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.util.MessageManager;
+
+import java.awt.Color;
+import java.awt.FontMetrics;
+import java.awt.Graphics;
+import java.awt.Graphics2D;
+import java.awt.RenderingHints;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.awt.event.MouseMotionListener;
+
+import javax.swing.JMenuItem;
+import javax.swing.JPanel;
+import javax.swing.JPopupMenu;
+import javax.swing.SwingUtilities;
+import javax.swing.ToolTipManager;
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class ScalePanel extends JPanel implements MouseMotionListener,
+ MouseListener
+{
+ protected int offy = 4;
+
+ /** DOCUMENT ME!! */
+ public int width;
+
+ protected AlignViewport av;
+
+ AlignmentPanel ap;
+
+ boolean stretchingGroup = false;
+
+ int min; // used by mouseDragged to see if user
+
+ int max; // used by mouseDragged to see if user
+
+ boolean mouseDragging = false;
+
+ // wants to delete columns
+ public ScalePanel(AlignViewport av, AlignmentPanel ap)
+ {
+ this.av = av;
+ this.ap = ap;
+
+ addMouseListener(this);
+ addMouseMotionListener(this);
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param evt
+ * DOCUMENT ME!
+ */
+ public void mousePressed(MouseEvent evt)
+ {
+ int x = (evt.getX() / av.getCharWidth()) + av.getStartRes();
+ final int res;
+
+ if (av.hasHiddenColumns())
+ {
+ x = av.getColumnSelection().adjustForHiddenColumns(x);
+ }
+
+ if (x >= av.getAlignment().getWidth())
+ {
+ res = av.getAlignment().getWidth() - 1;
+ }
+ else
+ {
+ res = x;
+ }
+
+ min = res;
+ max = res;
+
+ if (SwingUtilities.isRightMouseButton(evt))
+ {
+ JPopupMenu pop = new JPopupMenu();
+ if (reveal != null)
+ {
+ JMenuItem item = new JMenuItem(
+ MessageManager.getString("label.reveal"));
+ item.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ av.showColumn(reveal[0]);
+ reveal = null;
+ ap.paintAlignment(true);
+ if (ap.overviewPanel != null)
+ {
+ ap.overviewPanel.updateOverviewImage();
+ }
+ }
+ });
+ pop.add(item);
+
+ if (av.getColumnSelection().hasHiddenColumns())
+ {
+ item = new JMenuItem(
+ MessageManager.getString("action.reveal_all"));
+ item.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ av.showAllHiddenColumns();
+ reveal = null;
+ ap.paintAlignment(true);
+ if (ap.overviewPanel != null)
+ {
+ ap.overviewPanel.updateOverviewImage();
+ }
+ }
+ });
+ pop.add(item);
+ }
+ pop.show(this, evt.getX(), evt.getY());
+ }
+ else if (av.getColumnSelection().contains(res))
+ {
+ JMenuItem item = new JMenuItem(
+ MessageManager.getString("label.hide_columns"));
+ item.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ av.hideColumns(res, res);
+ if (av.getSelectionGroup() != null
+ && av.getSelectionGroup().getSize() == av
+ .getAlignment().getHeight())
+ {
+ av.setSelectionGroup(null);
+ }
+
+ ap.paintAlignment(true);
+ if (ap.overviewPanel != null)
+ {
+ ap.overviewPanel.updateOverviewImage();
+ }
+ }
+ });
+ pop.add(item);
+ pop.show(this, evt.getX(), evt.getY());
+ }
+ }
+ else
+ // LEFT MOUSE TO SELECT
+ {
+ if (!evt.isControlDown() && !evt.isShiftDown())
+ {
+ av.getColumnSelection().clear();
+ }
+
+ av.getColumnSelection().addElement(res);
+ SequenceGroup sg = new SequenceGroup();
+ // try to be as quick as possible
+ SequenceI[] iVec = av.getAlignment().getSequencesArray();
+ for (int i = 0; i < iVec.length; i++)
+ {
+ sg.addSequence(iVec[i], false);
+ iVec[i] = null;
+ }
+ iVec = null;
+ sg.setStartRes(res);
+ sg.setEndRes(res);
+
+ if (evt.isShiftDown())
+ {
+ int min = Math.min(av.getColumnSelection().getMin(), res);
+ int max = Math.max(av.getColumnSelection().getMax(), res);
+ for (int i = min; i < max; i++)
+ {
+ av.getColumnSelection().addElement(i);
+ }
+ sg.setStartRes(min);
+ sg.setEndRes(max);
+ }
+ av.setSelectionGroup(sg);
+ }
+
+ ap.paintAlignment(false);
+ av.sendSelection();
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param evt
+ * DOCUMENT ME!
+ */
+ public void mouseReleased(MouseEvent evt)
+ {
+ mouseDragging = false;
+
+ int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
+
+ if (av.hasHiddenColumns())
+ {
+ res = av.getColumnSelection().adjustForHiddenColumns(res);
+ }
+
+ if (res >= av.getAlignment().getWidth())
+ {
+ res = av.getAlignment().getWidth() - 1;
+ }
+
+ if (!stretchingGroup)
+ {
+ ap.paintAlignment(false);
+
+ return;
+ }
+
+ SequenceGroup sg = av.getSelectionGroup();
+
+ if (sg != null)
+ {
+ if (res > sg.getStartRes())
+ {
+ sg.setEndRes(res);
+ }
+ else if (res < sg.getStartRes())
+ {
+ sg.setStartRes(res);
+ }
+ }
+ stretchingGroup = false;
+ ap.paintAlignment(false);
+ av.sendSelection();
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param evt
+ * DOCUMENT ME!
+ */
+ public void mouseDragged(MouseEvent evt)
+ {
+ mouseDragging = true;
+
+ int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
+ if (res < 0)
+ {
+ res = 0;
+ }
+
+ if (av.hasHiddenColumns())
+ {
+ res = av.getColumnSelection().adjustForHiddenColumns(res);
+ }
+
+ if (res >= av.getAlignment().getWidth())
+ {
+ res = av.getAlignment().getWidth() - 1;
+ }
+
+ if (res < min)
+ {
+ min = res;
+ }
+
+ if (res > max)
+ {
+ max = res;
+ }
+
+ SequenceGroup sg = av.getSelectionGroup();
+
+ if (sg != null)
+ {
+ stretchingGroup = true;
+
+ if (!av.getColumnSelection().contains(res))
+ {
+ av.getColumnSelection().addElement(res);
+ }
+
+ if (res > sg.getStartRes())
+ {
+ sg.setEndRes(res);
+ }
+ if (res < sg.getStartRes())
+ {
+ sg.setStartRes(res);
+ }
+
+ int col;
+ for (int i = min; i <= max; i++)
+ {
+ col = i; // av.getColumnSelection().adjustForHiddenColumns(i);
+
+ if ((col < sg.getStartRes()) || (col > sg.getEndRes()))
+ {
+ av.getColumnSelection().removeElement(col);
+ }
+ else
+ {
+ av.getColumnSelection().addElement(col);
+ }
+ }
+
+ ap.paintAlignment(false);
+ }
+ }
+
+ public void mouseEntered(MouseEvent evt)
+ {
+ if (mouseDragging)
+ {
+ ap.getSeqPanel().scrollCanvas(null);
+ }
+ }
+
+ public void mouseExited(MouseEvent evt)
+ {
+ if (mouseDragging)
+ {
+ ap.getSeqPanel().scrollCanvas(evt);
+ }
+ }
+
+ public void mouseClicked(MouseEvent evt)
+ {
+ }
+
+ public void mouseMoved(MouseEvent evt)
+ {
+ if (!av.hasHiddenColumns())
+ {
+ return;
+ }
+
+ int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
+
+ res = av.getColumnSelection().adjustForHiddenColumns(res);
+
+ reveal = null;
+ if (av.getColumnSelection().getHiddenColumns() != null)
+ {
+ for (int[] region : av.getColumnSelection().getHiddenColumns())
+ {
+ if (res + 1 == region[0] || res - 1 == region[1])
+ {
+ reveal = region;
+ ToolTipManager.sharedInstance().registerComponent(this);
+ this.setToolTipText(MessageManager
+ .getString("label.reveal_hidden_columns"));
+ break;
+ }
+ else
+ {
+ this.setToolTipText(null);
+ }
+ }
+ }
+ repaint();
+ }
+
+ int[] reveal;
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param g
+ * DOCUMENT ME!
+ */
+ public void paintComponent(Graphics g)
+ {
+ drawScale(g, av.getStartRes(), av.getEndRes(), getWidth(), getHeight());
+ }
+
+ // scalewidth will normally be screenwidth,
+ public void drawScale(Graphics g, int startx, int endx, int width,
+ int height)
+ {
+ Graphics2D gg = (Graphics2D) g;
+ gg.setFont(av.getFont());
+
+ if (av.antiAlias)
+ {
+ gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING,
+ RenderingHints.VALUE_ANTIALIAS_ON);
+ }
+
+ // Fill in the background
+ gg.setColor(Color.white);
+ gg.fillRect(0, 0, width, height);
+ gg.setColor(Color.black);
+
+ // Fill the selected columns
+ ColumnSelection cs = av.getColumnSelection();
+ int avCharWidth = av.getCharWidth(), avCharHeight = av.getCharHeight();
+
+ int s;
+ if (cs != null)
+ {
+ gg.setColor(new Color(220, 0, 0));
+
+ for (int i = 0; i < cs.size(); i++)
+ {
+ int sel = cs.columnAt(i);
+ if (av.hasHiddenColumns())
+ {
+ if (cs.isVisible(sel))
+ {
+ sel = cs.findColumnPosition(sel);
+ }
+ else
+ {
+ continue;
+ }
+ }
+
+ if ((sel >= startx) && (sel <= endx))
+ {
+ gg.fillRect((sel - startx) * avCharWidth, 0, avCharWidth,
+ getHeight());
+ }
+ }
+ }
+ // Draw the scale numbers
+ gg.setColor(Color.black);
+
+ int scalestartx = (startx / 10) * 10;
+
+ FontMetrics fm = gg.getFontMetrics(av.getFont());
+ int y = avCharHeight - fm.getDescent();
+
+ if ((scalestartx % 10) == 0)
+ {
+ scalestartx += 5;
+ }
+
+ String string;
+ int maxX = 0;
+
+ for (int i = scalestartx; i < endx; i += 5)
+ {
+ if ((i % 10) == 0)
+ {
+ string = String.valueOf(av.getColumnSelection()
+ .adjustForHiddenColumns(i));
+ if ((i - startx - 1) * avCharWidth > maxX)
+ {
+ gg.drawString(string, (i - startx - 1) * avCharWidth, y);
+ maxX = (i - startx + 1) * avCharWidth + fm.stringWidth(string);
+ }
+
+ gg.drawLine(((i - startx - 1) * avCharWidth) + (avCharWidth / 2),
+ y + 2,
+ ((i - startx - 1) * avCharWidth) + (avCharWidth / 2),
+ y + (fm.getDescent() * 2));
+ }
+ else
+ {
+ gg.drawLine(((i - startx - 1) * avCharWidth) + (avCharWidth / 2),
+ y + fm.getDescent(), ((i - startx - 1) * avCharWidth)
+ + (avCharWidth / 2), y + (fm.getDescent() * 2));
+ }
+ }
+
+ if (av.hasHiddenColumns())
+ {
+ gg.setColor(Color.blue);
+ int res;
+ if (av.getShowHiddenMarkers()
+ && av.getColumnSelection().getHiddenColumns() != null)
+ {
+ for (int i = 0; i < av.getColumnSelection().getHiddenColumns()
+ .size(); i++)
+ {
+
+ res = av.getColumnSelection().findHiddenRegionPosition(i)
+ - startx;
+
+ if (res < 0 || res > endx - scalestartx)
+ {
+ continue;
+ }
+
+ gg.fillPolygon(new int[]
+ { res * avCharWidth - avCharHeight / 4,
+ res * avCharWidth + avCharHeight / 4, res * avCharWidth },
+ new int[]
+ { y - avCharHeight / 2, y - avCharHeight / 2, y + 8 },
+ 3);
+
+ }
+ }
+
+ if (reveal != null && reveal[0] > startx && reveal[0] < endx)
+ {
+ gg.drawString(MessageManager.getString("label.reveal_columns"),
+ reveal[0] * avCharWidth, 0);
+ }
+ }
+
+ }
+}