import java.awt.FontMetrics;
import java.awt.Graphics;
+import org.jfree.graphics2d.svg.SVGGraphics2D;
+import org.jibble.epsgraphics.EpsGraphics2D;
+
public class SequenceRenderer implements jalview.api.SequenceRenderer
{
final static int CHAR_TO_UPPER = 'A' - 'a';
* @param b
* DOCUMENT ME!
*/
+ @Override
public void prepare(Graphics g, boolean renderGaps)
{
graphics = g;
{
allGroups = av.getAlignment().findAllGroups(seq);
return resColourFinder.getResidueColour(av.getShowBoxes(),
- av.getResidueShading(),
- allGroups, seq, position,
- finder);
+ av.getResidueShading(), allGroups, seq, position, finder);
}
/**
if (i < length)
{
SequenceGroup currentSequenceGroup = resColourFinder
- .getCurrentSequenceGroup(
- allGroups, i);
+ .getCurrentSequenceGroup(allGroups, i);
if (currentSequenceGroup != null)
{
if (currentSequenceGroup.getDisplayBoxes())
{
resBoxColour = resColourFinder.getBoxColour(
- currentSequenceGroup.getGroupColourScheme(), seq,
- i);
+ currentSequenceGroup.getGroupColourScheme(), seq, i);
}
}
else if (av.getShowBoxes())
}
graphics.setColor(av.getTextColour());
- if (monospacedFont && av.getShowText() && allGroups.length == 0
- && !av.getColourText() && av.getThresholdTextColour() == 0)
+ boolean drawAllText = monospacedFont && av.getShowText()
+ && allGroups.length == 0 && !av.getColourText()
+ && av.getThresholdTextColour() == 0;
+
+ /*
+ * EPS or SVG misaligns monospaced strings (JAL-3239)
+ * so always draw these one character at a time
+ */
+ if (graphics instanceof EpsGraphics2D
+ || graphics instanceof SVGGraphics2D)
+ {
+ drawAllText = false;
+ }
+ if (drawAllText)
{
if (av.isRenderGaps())
{
}
SequenceGroup currentSequenceGroup = resColourFinder
- .getCurrentSequenceGroup(
- allGroups, i);
+ .getCurrentSequenceGroup(allGroups, i);
if (currentSequenceGroup != null)
{
if (!currentSequenceGroup.getDisplayText())
{
getboxColour = true;
resBoxColour = resColourFinder.getBoxColour(
- currentSequenceGroup.getGroupColourScheme(), seq,
- i);
+ currentSequenceGroup.getGroupColourScheme(), seq, i);
if (currentSequenceGroup.getColourText())
{
graphics.setColor(currentSequenceGroup.textColour);
}
boolean isgrep = currentSequenceGroup != null
- ? currentSequenceGroup.getSeqrep() == seq : false;
+ ? currentSequenceGroup.getSeqrep() == seq
+ : false;
if (!isarep && !isgrep
&& currentSequenceGroup.getShowNonconserved()) // todo
// optimize