/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
*/
package jalview.gui;
-import java.util.*;
-
import java.awt.*;
import java.awt.event.*;
import javax.swing.*;
final JPanel bigpanel = new JPanel(new BorderLayout());
JPanel panel = new JPanel();
bigpanel.add(panel, BorderLayout.CENTER);
- bigpanel
- .add(
- new JLabel(
- "<html><i>Select a dark and light text colour, then set the threshold to"
- + "<br>switch between colours, based on background colour</i></html>"),
- BorderLayout.NORTH);
+ bigpanel.add(
+ new JLabel(
+ "<html><i>Select a dark and light text colour, then set the threshold to"
+ + "<br>switch between colours, based on background colour</i></html>"),
+ BorderLayout.NORTH);
panel.add(col1);
panel.add(slider);
panel.add(col2);
if (sg == null)
{
ap.av.textColour = col;
- if (ap.av.colourAppliesToAllGroups)
+ if (ap.av.getColourAppliesToAllGroups())
{
setGroupTextColour();
}
if (sg == null)
{
ap.av.textColour2 = col;
- if (ap.av.colourAppliesToAllGroups)
+ if (ap.av.getColourAppliesToAllGroups())
{
setGroupTextColour();
}
if (sg == null)
{
ap.av.thresholdTextColour = value;
- if (ap.av.colourAppliesToAllGroups)
+ if (ap.av.getColourAppliesToAllGroups())
{
setGroupTextColour();
}
void setGroupTextColour()
{
- if (ap.av.alignment.getGroups() == null)
+ if (ap.av.getAlignment().getGroups() == null)
{
return;
}
- Vector groups = ap.av.alignment.getGroups();
-
- for (int i = 0; i < groups.size(); i++)
+ for (SequenceGroup sg : ap.av.getAlignment().getGroups())
{
- SequenceGroup sg = (SequenceGroup) groups.elementAt(i);
sg.textColour = ap.av.textColour;
sg.textColour2 = ap.av.textColour2;
sg.thresholdTextColour = ap.av.thresholdTextColour;