.getDefault("biojs_template_directory", DEFAULT_DIR);
public static final String BJS_TEMPLATE_GIT_REPO = jalview.bin.Cache
- .getDefault(
- "biojs_template_git_repo",
+ .getDefault("biojs_template_git_repo",
"https://raw.githubusercontent.com/jalview/exporter-templates/master/biojs/package.json");
public BioJsHTMLOutput(AlignmentPanel ap)
return;
} catch (Exception e)
{
- setProgressMessage(MessageManager.formatMessage(
- "info.error_creating_file", "BioJS MSA"));
+ setProgressMessage(MessageManager
+ .formatMessage("info.error_creating_file", "BioJS MSA"));
e.printStackTrace();
return;
}
}
-
-
public static void refreshVersionInfo(String dirName)
throws URISyntaxException
{
{
try
{
- String gitRepoPkgJson = getURLContentAsString(BJS_TEMPLATE_GIT_REPO);
+ String gitRepoPkgJson = getURLContentAsString(
+ BJS_TEMPLATE_GIT_REPO);
if (gitRepoPkgJson != null)
{
BioJSRepositoryPojo release = new BioJSRepositoryPojo(
}
}
}
- return responseStrBuilder == null ? null : responseStrBuilder
- .toString();
+ return responseStrBuilder == null ? null
+ : responseStrBuilder.toString();
}
public static File getCurrentBJSTemplateFile()
String generatedBioJsWithJalviewAlignmentAsJson = bioJSTemplateString
.replaceAll("#sequenceData#", bioJSON).toString();
- PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
- generatedFile));
+ PrintWriter out = new java.io.PrintWriter(
+ new java.io.FileWriter(generatedFile));
out.print(generatedBioJsWithJalviewAlignmentAsJson);
out.flush();
out.close();
- setProgressMessage(MessageManager.formatMessage(
- "status.export_complete", "BioJS"));
+ setProgressMessage(MessageManager
+ .formatMessage("status.export_complete", "BioJS"));
exportCompleted();
} catch (OutOfMemoryError err)
new OOMWarning("Creating Image for " + generatedFile, err);
} catch (Exception e)
{
- setProgressMessage(MessageManager.formatMessage(
- "info.error_creating_file", "HTML"));
+ setProgressMessage(MessageManager
+ .formatMessage("info.error_creating_file", "HTML"));
e.printStackTrace();
}