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JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature attributes
[jalview.git]
/
src
/
jalview
/
io
/
ClustalFile.java
diff --git
a/src/jalview/io/ClustalFile.java
b/src/jalview/io/ClustalFile.java
index
a37afd9
..
afb2009
100755
(executable)
--- a/
src/jalview/io/ClustalFile.java
+++ b/
src/jalview/io/ClustalFile.java
@@
-77,7
+77,9
@@
public class ClustalFile extends AlignFile
{
top = true;
}
- if (line.indexOf(" ") != 0)
+ boolean isConservation = line.startsWith(SPACE)
+ || line.startsWith(TAB);
+ if (!isConservation)
{
str = new StringTokenizer(line);