*/
package jalview.io;
-import jalview.api.AlignExportSettingI;
+import java.util.Locale;
+
+import jalview.api.AlignExportSettingsI;
import jalview.api.AlignmentViewPanel;
import jalview.bin.Cache;
import jalview.datamodel.Alignment;
}
public FormatAdapter(AlignmentViewPanel alignPanel,
- AlignExportSettingI settings)
+ AlignExportSettingsI settings)
{
super(alignPanel, settings);
}
private void init()
{
- if (jalview.bin.Cache.getDefault("STRUCT_FROM_PDB", true))
+ if (Cache.getDefault("STRUCT_FROM_PDB", true))
{
- annotFromStructure = jalview.bin.Cache.getDefault("ADD_TEMPFACT_ANN",
- true);
- localSecondaryStruct = jalview.bin.Cache.getDefault("ADD_SS_ANN",
- true);
- serviceSecondaryStruct = jalview.bin.Cache.getDefault("USE_RNAVIEW",
- true);
+ annotFromStructure = Cache.getDefault("ADD_TEMPFACT_ANN", true);
+ localSecondaryStruct = Cache.getDefault("ADD_SS_ANN", true);
+ serviceSecondaryStruct = Cache.getDefault("USE_RNAVIEW", true);
}
else
{
public boolean getCacheSuffixDefault(FileFormatI format)
{
- return Cache.getDefault(format.getName().toUpperCase() + "_JVSUFFIX",
- true);
+ return Cache.getDefault(
+ format.getName().toUpperCase(Locale.ROOT) + "_JVSUFFIX", true);
}
public String formatSequences(FileFormatI format, AlignmentI alignment,