if (noSeqs < 1)
{
- throw new IOException(
- MessageManager.getString("exception.pfam_no_sequences_found"));
+ throw new IOException(MessageManager
+ .getString("exception.pfam_no_sequences_found"));
}
for (i = 0; i < headers.size(); i++)
}
Sequence newSeq = parseId(headers.get(i).toString());
- newSeq.setSequence(seqhash.get(headers.get(i).toString())
- .toString());
+ newSeq.setSequence(
+ seqhash.get(headers.get(i).toString()).toString());
seqs.addElement(newSeq);
}
else
{
String tmp = printId(s[i], jvsuffix);
- if (s[i].getSequence().length > max)
- {
- max = s[i].getSequence().length;
- }
+ max = Math.max(max, s[i].getLength());
if (tmp.length() > maxid)
{