/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
{
this.ap = ap;
this.al = al;
- output
- .setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered."
- + "\nIn order to display these features, try changing the names of your sequences to the ids suggested below."
- + "\n\nRunning WSWUBlast at EBI."
- + "\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R."
- + "\nSOAP-based services provided by the European Bioinformatics Institute."
- + "\nNucleic Acids Res. 33(1):W25-W28 (2005));");
+ output.setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered."
+ + "\nIn order to display these features, try changing the names of your sequences to the ids suggested below."
+ + "\n\nRunning WSWUBlast at EBI."
+ + "\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R."
+ + "\nSOAP-based services provided by the European Bioinformatics Institute."
+ + "\nNucleic Acids Res. 33(1):W25-W28 (2005));");
Desktop.addInternalFrame(output,
"BLASTing for unidentified sequences ", 800, 300);
Data inputs[] = new Data[1];
Data input = new Data();
input.setType("sequence");
- input.setContent(AlignSeq.extractGaps("-. ", sequence
- .getSequenceAsString()));
+ input.setContent(AlignSeq.extractGaps("-. ",
+ sequence.getSequenceAsString()));
inputs[0] = input;
WSWUBlastService service = new WSWUBlastServiceLocator();