+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
package jalview.jbgui;
-import javax.swing.*;
import java.awt.*;
import java.awt.event.*;
+import javax.swing.*;
+import javax.swing.event.*;
+import jalview.datamodel.*;
+import jalview.io.*;
public class GFinder extends JPanel
{
JLabel jLabel1 = new JLabel();
- protected JTextField textfield = new JTextField();
+
protected JButton findAll = new JButton();
+
protected JButton findNext = new JButton();
+
JPanel jPanel1 = new JPanel();
+
GridLayout gridLayout1 = new GridLayout();
+
protected JButton createNewGroup = new JButton();
+ JScrollPane jScrollPane1 = new JScrollPane();
+
+ protected JTextArea textfield = new JTextArea();
+
+ BorderLayout borderLayout1 = new BorderLayout();
+
+ JPanel jPanel2 = new JPanel();
+
+ JPanel jPanel3 = new JPanel();
+
+ JPanel jPanel4 = new JPanel();
+
+ BorderLayout borderLayout2 = new BorderLayout();
+
+ JPanel jPanel6 = new JPanel();
+
+ protected JCheckBox caseSensitive = new JCheckBox();
+
public GFinder()
{
try
{
jbInit();
- }
- catch(Exception e)
+ } catch (Exception e)
{
e.printStackTrace();
}
}
+
private void jbInit() throws Exception
{
jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
jLabel1.setText("Find");
- jLabel1.setBounds(new Rectangle(3, 30, 34, 15));
- this.setLayout(null);
- textfield.setFont(new java.awt.Font("Verdana", 0, 12));
- textfield.setText("");
- textfield.setBounds(new Rectangle(40, 27, 133, 21));
- textfield.addKeyListener(new java.awt.event.KeyAdapter()
- {
- public void keyTyped(KeyEvent e)
- {
- textfield_keyTyped(e);
- }
- });
- textfield.addActionListener(new java.awt.event.ActionListener()
- {
- public void actionPerformed(ActionEvent e)
- {
- textfield_actionPerformed(e);
- }
- });
+ this.setLayout(borderLayout1);
findAll.setFont(new java.awt.Font("Verdana", 0, 12));
findAll.setText("Find all");
findAll.addActionListener(new java.awt.event.ActionListener()
findAll_actionPerformed(e);
}
});
- findNext.setEnabled(false);
findNext.setFont(new java.awt.Font("Verdana", 0, 12));
findNext.setText("Find Next");
findNext.addActionListener(new java.awt.event.ActionListener()
findNext_actionPerformed(e);
}
});
- jPanel1.setBounds(new Rectangle(180, 5, 141, 64));
jPanel1.setLayout(gridLayout1);
gridLayout1.setHgap(0);
gridLayout1.setRows(3);
gridLayout1.setVgap(2);
createNewGroup.setEnabled(false);
createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12));
- createNewGroup.setToolTipText("");
createNewGroup.setMargin(new Insets(0, 0, 0, 0));
- createNewGroup.setText("Create new group");
+ createNewGroup.setText("New Feature");
createNewGroup.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
createNewGroup_actionPerformed(e);
}
});
+ textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12));
+ textfield.setText("");
+ textfield.setLineWrap(true);
+ textfield.addCaretListener(new CaretListener()
+ {
+ public void caretUpdate(CaretEvent e)
+ {
+ textfield_caretUpdate(e);
+ }
+ });
+ textfield.addKeyListener(new java.awt.event.KeyAdapter()
+ {
+ public void keyPressed(KeyEvent e)
+ {
+ textfield_keyPressed(e);
+ }
+ });
+
+ borderLayout1.setHgap(5);
+ borderLayout1.setVgap(5);
+ jPanel4.setLayout(borderLayout2);
+ jPanel2.setPreferredSize(new Dimension(10, 1));
+ jPanel3.setPreferredSize(new Dimension(10, 1));
+ caseSensitive.setHorizontalAlignment(SwingConstants.LEFT);
+ caseSensitive.setText("Match Case");
jPanel1.add(findNext, null);
jPanel1.add(findAll, null);
jPanel1.add(createNewGroup, null);
- this.add(textfield, null);
- this.add(jLabel1, null);
- this.add(jPanel1, null);
+ this.add(jLabel1, java.awt.BorderLayout.WEST);
+ this.add(jPanel1, java.awt.BorderLayout.EAST);
+ this.add(jPanel2, java.awt.BorderLayout.SOUTH);
+ this.add(jPanel3, java.awt.BorderLayout.NORTH);
+ this.add(jPanel4, java.awt.BorderLayout.CENTER);
+ jPanel4.add(jScrollPane1, java.awt.BorderLayout.CENTER);
+ jScrollPane1.getViewport().add(textfield);
+ jPanel4.add(jPanel6, java.awt.BorderLayout.NORTH);
+ jPanel4.add(caseSensitive, java.awt.BorderLayout.SOUTH);
}
protected void findNext_actionPerformed(ActionEvent e)
{
-
}
protected void findAll_actionPerformed(ActionEvent e)
{
-
}
-
- protected void textfield_actionPerformed(ActionEvent e)
+ protected void textfield_keyPressed(KeyEvent e)
{
-
+ if (e.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ e.consume();
+ findNext_actionPerformed(null);
+ }
}
- void textfield_keyTyped(KeyEvent e)
+ public void createNewGroup_actionPerformed(ActionEvent e)
{
- findNext.setEnabled(true);
}
- public void createNewGroup_actionPerformed(ActionEvent e)
+ public void textfield_caretUpdate(CaretEvent e)
{
+ if (textfield.getText().indexOf(">") > -1)
+ {
+ SwingUtilities.invokeLater(new Runnable()
+ {
+ public void run()
+ {
+ String str = textfield.getText();
+ Alignment al = null;
+ try
+ {
+ al = new FormatAdapter().readFile(str, "Paste", "FASTA");
+ } catch (Exception ex)
+ {
+ }
+ if (al != null && al.getHeight() > 0)
+ {
+ str = jalview.analysis.AlignSeq.extractGaps(
+ jalview.util.Comparison.GapChars, al.getSequenceAt(0)
+ .getSequenceAsString());
+ textfield.setText(str);
+ }
+ }
+ });
+ }
}
-
}