/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.jbgui;
-import java.awt.*;
-import java.awt.event.*;
-import javax.swing.*;
-import javax.swing.event.*;
+import jalview.datamodel.AlignmentI;
+import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
import jalview.io.FormatAdapter;
-import jalview.datamodel.Alignment;
+import jalview.io.cache.AppCache;
+import jalview.io.cache.CacheBoxI;
+import jalview.io.cache.Cacheable;
+import jalview.util.MessageManager;
+
import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.GridLayout;
+import java.awt.Insets;
+import java.awt.event.ActionEvent;
+import java.awt.event.KeyEvent;
+
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JComboBox;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.SwingConstants;
+import javax.swing.SwingUtilities;
+import javax.swing.event.CaretEvent;
+import javax.swing.event.CaretListener;
+import javax.swing.text.JTextComponent;
-public class GFinder
- extends JPanel
+public class GFinder extends JPanel implements Cacheable
{
- JLabel jLabel1 = new JLabel();
+ JLabel jLabelFind = new JLabel();
+
protected JButton findAll = new JButton();
+
protected JButton findNext = new JButton();
- JPanel jPanel1 = new JPanel();
+
+ JPanel actionsPanel = new JPanel();
+
GridLayout gridLayout1 = new GridLayout();
+
protected JButton createNewGroup = new JButton();
- JScrollPane jScrollPane1 = new JScrollPane();
- protected JTextArea textfield = new JTextArea();
- BorderLayout borderLayout1 = new BorderLayout();
+
+ protected JComboBox<String> searchBox = new JComboBox<String>();
+
+ BorderLayout mainBorderLayout = new BorderLayout();
+
JPanel jPanel2 = new JPanel();
+
JPanel jPanel3 = new JPanel();
+
JPanel jPanel4 = new JPanel();
+
BorderLayout borderLayout2 = new BorderLayout();
+
JPanel jPanel6 = new JPanel();
+
protected JCheckBox caseSensitive = new JCheckBox();
+
+ protected JCheckBox searchDescription = new JCheckBox();
+
+ GridLayout optionsGridLayout = new GridLayout();
+
+ private static final String FINDER_CACHE_KEY = "CACHE.FINDER";
+
public GFinder()
{
try
{
jbInit();
- }
- catch (Exception e)
+ } catch (Exception e)
{
e.printStackTrace();
}
}
- private void jbInit()
- throws Exception
+ private void jbInit() throws Exception
{
- jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
- jLabel1.setText("Find");
- this.setLayout(borderLayout1);
+ jLabelFind.setFont(new java.awt.Font("Verdana", 0, 12));
+ jLabelFind.setText(MessageManager.getString("label.find"));
+ this.setLayout(mainBorderLayout);
findAll.setFont(new java.awt.Font("Verdana", 0, 12));
- findAll.setText("Find all");
+ findAll.setText(MessageManager.getString("action.find_all"));
findAll.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
findAll_actionPerformed(e);
}
});
findNext.setFont(new java.awt.Font("Verdana", 0, 12));
- findNext.setText("Find Next");
+ findNext.setText(MessageManager.getString("action.find_next"));
findNext.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
findNext_actionPerformed(e);
}
});
- jPanel1.setLayout(gridLayout1);
+ actionsPanel.setLayout(gridLayout1);
gridLayout1.setHgap(0);
gridLayout1.setRows(3);
gridLayout1.setVgap(2);
createNewGroup.setEnabled(false);
createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12));
createNewGroup.setMargin(new Insets(0, 0, 0, 0));
- createNewGroup.setText("New Feature");
+ createNewGroup.setText(MessageManager.getString("label.new_feature"));
createNewGroup.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
createNewGroup_actionPerformed(e);
}
});
- textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12));
- textfield.setText("");
- textfield.setLineWrap(true);
- textfield.addCaretListener(new CaretListener()
+ searchBox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12));
+ searchBox.setEditable(true);
+ searchBox
+.setPrototypeDisplayValue("XXXXXXXXXXXXXXXXXXXXXXXXXXXX");
+ ((JTextComponent) searchBox.getEditor().getEditorComponent())
+ .addCaretListener(new CaretListener()
{
+ @Override
public void caretUpdate(CaretEvent e)
{
textfield_caretUpdate(e);
}
});
- textfield.addKeyListener(new java.awt.event.KeyAdapter() {
- public void keyPressed(KeyEvent e) {
- textfield_keyPressed(e);
- }
+ searchBox.getEditor().getEditorComponent()
+ .addKeyListener(new java.awt.event.KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent e)
+ {
+ textfield_keyPressed(e);
+ }
});
- borderLayout1.setHgap(5);
- borderLayout1.setVgap(5);
+ mainBorderLayout.setHgap(5);
+ mainBorderLayout.setVgap(5);
jPanel4.setLayout(borderLayout2);
jPanel2.setPreferredSize(new Dimension(10, 1));
jPanel3.setPreferredSize(new Dimension(10, 1));
caseSensitive.setHorizontalAlignment(SwingConstants.LEFT);
- caseSensitive.setText("Match Case");
- jPanel1.add(findNext, null);
- jPanel1.add(findAll, null);
- jPanel1.add(createNewGroup, null);
- this.add(jLabel1, java.awt.BorderLayout.WEST);
- this.add(jPanel1, java.awt.BorderLayout.EAST);
+ caseSensitive.setText(MessageManager.getString("label.match_case"));
+
+ searchDescription.setText(MessageManager
+ .getString("label.include_description"));
+
+ actionsPanel.add(findNext, null);
+ actionsPanel.add(findAll, null);
+ actionsPanel.add(createNewGroup, null);
+ this.add(jLabelFind, java.awt.BorderLayout.WEST);
+ this.add(actionsPanel, java.awt.BorderLayout.EAST);
this.add(jPanel2, java.awt.BorderLayout.SOUTH);
this.add(jPanel3, java.awt.BorderLayout.NORTH);
this.add(jPanel4, java.awt.BorderLayout.CENTER);
- jPanel4.add(jScrollPane1, java.awt.BorderLayout.CENTER);
- jScrollPane1.getViewport().add(textfield);
- jPanel4.add(jPanel6, java.awt.BorderLayout.NORTH);
- jPanel4.add(caseSensitive, java.awt.BorderLayout.SOUTH);
+ jPanel4.add(searchBox, java.awt.BorderLayout.NORTH);
+
+ JPanel optionsPanel = new JPanel();
+
+ optionsGridLayout.setHgap(0);
+ optionsGridLayout.setRows(2);
+ optionsGridLayout.setVgap(2);
+ optionsPanel.setLayout(optionsGridLayout);
+ optionsPanel.add(caseSensitive, null);
+ optionsPanel.add(searchDescription, null);
+
+ jPanel4.add(optionsPanel, java.awt.BorderLayout.WEST);
}
protected void findNext_actionPerformed(ActionEvent e)
{
}
-
protected void textfield_keyPressed(KeyEvent e)
{
- if(e.getKeyCode()==KeyEvent.VK_ENTER)
+ if (e.getKeyCode() == KeyEvent.VK_ENTER)
{
e.consume();
findNext_actionPerformed(null);
public void textfield_caretUpdate(CaretEvent e)
{
- if (textfield.getText().indexOf(">") > -1)
+ if (searchBox.getEditor().getItem().toString().indexOf(">") > -1)
{
SwingUtilities.invokeLater(new Runnable()
{
+ @Override
public void run()
{
- String str = textfield.getText();
- Alignment al = null;
- try{al = new FormatAdapter().readFile(str, "Paste", "FASTA");}
- catch(Exception ex){}
- if(al!=null && al.getHeight()>0)
+ String str = searchBox.getEditor().getItem().toString();
+ AlignmentI al = null;
+ try
+ {
+ al = new FormatAdapter().readFile(str, DataSourceType.PASTE,
+ FileFormat.Fasta);
+ } catch (Exception ex)
+ {
+ }
+ if (al != null && al.getHeight() > 0)
{
str = jalview.analysis.AlignSeq.extractGaps(
- jalview.util.Comparison.GapChars,
- al.getSequenceAt(0).getSequenceAsString());
+ jalview.util.Comparison.GapChars, al.getSequenceAt(0)
+ .getSequenceAsString());
- textfield.setText(str);
+ searchBox.setSelectedItem(str);
}
}
});
}
}
+
+
+
+
+ @Override
+ public CacheBoxI<String> getCacheComboBox()
+ {
+ return new CacheBoxI<String>()
+ {
+
+ @Override
+ public void setSelectedItem(Object anObject)
+ {
+ searchBox.setSelectedItem(anObject);
+ }
+
+ @Override
+ public void requestFocus()
+ {
+ searchBox.requestFocusInWindow();
+ }
+
+ @Override
+ public void looseFocus()
+ {
+ jPanel6.requestFocusInWindow();
+ }
+
+ @Override
+ public void addItem(String item)
+ {
+ searchBox.addItem(item);
+ }
+
+ @Override
+ public void removeAllItems()
+ {
+ searchBox.removeAllItems();
+ }
+
+ @Override
+ public int getItemCount()
+ {
+ return searchBox.getItemCount();
+ }
+
+ @Override
+ public String getUserInput()
+ {
+ return searchBox.getEditor().getItem() == null ? "" : searchBox
+ .getEditor().getItem().toString().trim();
+ }
+ };
+ }
+
+ @Override
+ public String getCacheKey()
+ {
+ return FINDER_CACHE_KEY;
+ }
+
+ @Override
+ public void initCache()
+ {
+ AppCache.getInstance().initCache(this);
+ }
+
+ @Override
+ public void updateCache()
+ {
+ AppCache.getInstance().updateCache(this);
+ }
+
}